C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FERM domain containing 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128428 Frmd5-004 ENSMUSG00000027238 10090 - 2:121548306-121807023 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLiverOvaryPlacentaENSMUST00000128428
Transcript ID Adipose Adrenal Breast Colon Liver Ovary Placenta
ENSMUST00000128428 0.036±0.00 18.825±6.31 0.183±0.04 0.158±0.11 0.062±0.00 13.605±1.96 0.096±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0002 VISTA 2:121250003-121852600
CIL_00067Y CIL_00067Y_0002 CGP 2:121506723-121807087
CIL_000687 CIL_000687_0002 CGP 2:121545529-121936220

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008092 IEA cytoskeletal protein binding
GO:0008150 ND biological_process
GO:0019898 IEA extrinsic component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000402883 FRMD5-009 protein_coding Homo_sapiens 0 1157
ENST00000417257 FRMD5-001 protein_coding Homo_sapiens 0 1158
ENST00000421674 FRMD5-003 nonsense_mediated_decay Homo_sapiens 0 1098
ENST00000449926 FRMD5-006 protein_coding Homo_sapiens 0 1626
ENST00000451277 FRMD5-010 nonsense_mediated_decay Homo_sapiens 0 2534
ENST00000458630 FRMD5-004 nonsense_mediated_decay Homo_sapiens 0 1014
ENST00000473965 FRMD5-008 retained_intron Homo_sapiens 0 370
ENST00000479319 FRMD5-007 retained_intron Homo_sapiens 0 243
ENST00000484674 FRMD5-005 protein_coding Homo_sapiens 0 1544
ENST00000558108 FRMD5-012 protein_coding Homo_sapiens 0 364
ENST00000618556 FRMD5-201 protein_coding Homo_sapiens 0 1014

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