C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RanBP-type and C3HC4-type zinc finger containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128645 Rbck1-007 ENSMUSG00000027466 10090 - 2:152322938-152324616 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonLiverOvaryPlacentaTestisENSMUST00000128645
Transcript ID Bladder Brain Breast Colon Liver Ovary Placenta Testis
ENSMUST00000128645 15.404±0.00 29.572±2.45 18.927±8.63 25.429±0.00 9.075±1.44 18.190±7.31 7.970±4.66 3.044±1.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0002 VISTA 2:152099091-152699726

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000353660 RBCK1-009 protein_coding Homo_sapiens 0 244
ENST00000356286 RBCK1-010 protein_coding Homo_sapiens 0 244
ENST00000382214 RBCK1-005 nonsense_mediated_decay Homo_sapiens 0 207

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