C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RanBP-type and C3HC4-type zinc finger containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356286 RBCK1-010 ENSG00000125826 9606 + 20:408053-430966 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356286
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356286 3.898±0.00 15.509±0.00 3.964±0.00 9.812±0.00 7.324±5.62 12.999±0.00 5.511±2.73 11.522±0.00 7.282±6.20 7.236±0.00 24.741±13.42 24.754±0.13 10.967±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0001 VISTA 20:23407-624368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0008270 IEA zinc ion binding
GO:0016032 IEA viral process
GO:0016874 IEA ligase activity
GO:0032088 IDA negative regulation of NF-kappaB transcription factor activity
GO:0042346 IEA positive regulation of NF-kappaB import into nucleus
GO:0043065 IEA positive regulation of apoptotic process
GO:0043123 IDA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 IDA ubiquitin binding
GO:0043161 IMP proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0050852 IDA T cell receptor signaling pathway
GO:0051092 IDA positive regulation of NF-kappaB transcription factor activity
GO:0060546 IEA negative regulation of necroptotic process
GO:0071797 IDA LUBAC complex
GO:0097039 IDA protein linear polyubiquitination
GO:2001238 IEA positive regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109847 Rbck1-001 protein_coding Mus_musculus 0 1829
ENSMUST00000028964 Rbck1-002 protein_coding Mus_musculus 0 1821
ENSMUST00000145889 Rbck1-006 retained_intron Mus_musculus 0 909
ENSMUST00000130165 Rbck1-005 retained_intron Mus_musculus 0 800
ENSMUST00000144865 Rbck1-008 protein_coding Mus_musculus 0 499
ENSMUST00000129590 Rbck1-004 processed_transcript Mus_musculus 0 339
ENSMUST00000128645 Rbck1-007 retained_intron Mus_musculus 0 244

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