C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RanBP-type and C3HC4-type zinc finger containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027466 Rbck1 10090 - 2:152316334-152332653 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028964 Rbck1-002 152316334-152332653 protein_coding
  ENSMUST00000109847 Rbck1-001 152316334-152332412 protein_coding
  ENSMUST00000128645 Rbck1-007 152322938-152324616 retained_intron
  ENSMUST00000129590 Rbck1-004 152326404-152332384 processed_transcript
  ENSMUST00000130165 Rbck1-005 152316334-152322997 retained_intron
  ENSMUST00000131889 Rbck1-003 152324540-152327757 processed_transcript
  ENSMUST00000144865 Rbck1-008 152318780-152324364 protein_coding
  ENSMUST00000145889 Rbck1-006 152318312-152323498 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028964ENSMUST00000109847ENSMUST00000128645ENSMUST00000129590ENSMUST00000130165ENSMUST00000145889
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028964 N/A N/A N/A N/A 20.882±0.00 N/A N/A N/A 6.490±3.27 N/A N/A 11.655±0.73 3.631±0.00 4.361±0.51
ENSMUST00000109847 43.671±0.84 95.473±7.88 28.680±1.94 28.297±13.63 64.653±8.08 50.302±4.71 16.811±2.26 26.813±1.96 20.321±3.84 49.185±1.53 10.891±2.55 51.808±23.47 11.382±5.95 11.252±1.37
ENSMUST00000128645 N/A N/A 15.404±0.00 29.572±2.45 18.927±8.63 25.429±0.00 N/A N/A 9.075±1.44 N/A N/A 18.190±7.31 7.970±4.66 3.044±1.30
ENSMUST00000129590 N/A N/A N/A 23.318±0.00 N/A N/A N/A N/A N/A N/A N/A 25.610±0.00 9.043±0.26 3.887±0.00
ENSMUST00000130165 N/A N/A N/A 10.995±0.00 N/A N/A N/A N/A N/A N/A N/A 7.800±1.34 3.350±0.00 N/A
ENSMUST00000145889 N/A N/A N/A 20.887±0.00 N/A N/A N/A N/A N/A N/A N/A 31.156±0.00 10.523±1.76 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0002 VISTA 2:152099091-152699726

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000209 IEA protein polyubiquitination
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0032088 IEA negative regulation of NF-kappaB transcription factor activity
GO:0042346 IMP positive regulation of NF-kappaB import into nucleus
GO:0043065 IMP positive regulation of apoptotic process
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 ISS ubiquitin binding
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0050852 IEA T cell receptor signaling pathway
GO:0051092 IEA positive regulation of NF-kappaB transcription factor activity
GO:0060546 IGI negative regulation of necroptotic process
GO:0071797 ISS LUBAC complex
GO:0097039 ISS protein linear polyubiquitination
GO:2001238 IMP positive regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000125826 RBCK1 RanBP-type and C3HC4-type zinc finger containing 1 protein_coding Homo_sapiens

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