C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RanBP-type and C3HC4-type zinc finger containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382214 RBCK1-005 ENSG00000125826 9606 + 20:408050-430966 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastKidneyLiverLungPlacentaTestisENST00000382214
Transcript ID Adipose Breast Kidney Liver Lung Placenta Testis
ENST00000382214 4.048±0.00 3.991±0.00 4.088±0.00 1.396±0.00 7.540±0.00 11.082±0.00 4.158±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0001 VISTA 20:23407-624368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109847 Rbck1-001 protein_coding Mus_musculus 0 1666
ENSMUST00000028964 Rbck1-002 protein_coding Mus_musculus 0 1661
ENSMUST00000130165 Rbck1-005 retained_intron Mus_musculus 0 795
ENSMUST00000145889 Rbck1-006 retained_intron Mus_musculus 0 747
ENSMUST00000129590 Rbck1-004 processed_transcript Mus_musculus 0 339
ENSMUST00000144865 Rbck1-008 protein_coding Mus_musculus 0 337
ENSMUST00000128645 Rbck1-007 retained_intron Mus_musculus 0 207

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