C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: excision repair cross-complementing rodent repair deficiency, complementation group 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129049 Ercc4-004 ENSMUSG00000022545 10090 + 16:13111794-13150617 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000129049
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000129049 0.892±0.00 1.947±0.57 2.143±0.13 1.298±0.39 1.780±0.98 1.089±0.20 0.297±0.00 1.219±0.37 0.331±0.06 1.030±0.00 0.258±0.13 1.234±0.39 0.463±0.12 0.705±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DX CIL_0007DX_0002 CGP 16:11984113-13150617
CIL_0002RP CIL_0002RP_0003 CGP 16:13109684-13417529

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000014 IBA single-stranded DNA endodeoxyribonuclease activity
GO:0000109 ISO nucleotide-excision repair complex
GO:0000110 IBA nucleotide-excision repair factor 1 complex
GO:0000712 IBA resolution of meiotic recombination intermediates
GO:0000724 IBA double-strand break repair via homologous recombination
GO:0000737 IBA DNA catabolic process, endonucleolytic
GO:0001094 IDA TFIID-class transcription factor binding
GO:0003684 IBA damaged DNA binding
GO:0003697 IBA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005669 IDA transcription factor TFIID complex
GO:0006281 IMP DNA repair
GO:0006289 ISO nucleotide-excision repair
GO:0006296 IBA nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0009650 IMP UV protection
GO:1901255 IBA nucleotide-excision repair involved in interstrand cross-link repair

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311895 ERCC4-001 protein_coding Homo_sapiens 0 1227
ENST00000574194 ERCC4-007 nonsense_mediated_decay Homo_sapiens 0 377
ENST00000574781 ERCC4-006 processed_transcript Homo_sapiens 0 403
ENST00000575156 ERCC4-003 protein_coding Homo_sapiens 0 808
ENST00000595191 MYO1F-005 retained_intron Homo_sapiens 0.000000000003 77

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