C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002RP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000014161-ENSDARG00000088307 CGP 7955 12:21055319-21141383
GeneTranscriptPositionBiotype
ENSDARG00000014161 (ercc4)
excision repair cross-complementing rodent repair deficiency, complementation group 4 		ENSDART00000015780 (ercc4-001) 21055319-21070814 protein_coding
ENSDARG00000088307 (mkl2a)
MKL/myocardin-like 2a 		ENSDART00000127655 (mkl2a-201) 21088442-21140514 protein_coding
ENSDART00000153177 (mkl2a-001) 21072682-21141383 protein_coding
CIL_0002RP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000175595-ENSG00000186260 CGP 9606 16:13920157-14266773
GeneTranscriptPositionBiotype
ENSG00000175595 (ERCC4)
excision repair cross-complementation group 4 		ENST00000311895 (ERCC4-001) 13920157-13952345 protein_coding
ENST00000389138 (ERCC4-004) 13932026-13948425 retained_intron
ENST00000462862 (ERCC4-002) 13937764-13948004 nonsense_mediated_decay
ENST00000573018 (ERCC4-008) 13934022-13935387 retained_intron
ENST00000574194 (ERCC4-007) 13926552-13932239 nonsense_mediated_decay
ENST00000574781 (ERCC4-006) 13927450-13930878 processed_transcript
ENST00000575156 (ERCC4-003) 13920157-13933247 protein_coding
ENST00000576348 (ERCC4-005) 13920191-13926801 retained_intron
ENSG00000186260 (MKL2)
MKL/myocardin-like 2 		ENST00000318282 (MKL2-201) 14079288-14266772 protein_coding
ENST00000571589 (MKL2-001) 14071322-14266771 protein_coding
ENST00000571770 (MKL2-012) 14258123-14262440 nonsense_mediated_decay
ENST00000572400 (MKL2-003) 14071322-14144785 retained_intron
ENST00000572567 (MKL2-004) 14186717-14241425 protein_coding
ENST00000572588 (MKL2-006) 14247411-14266773 retained_intron
ENST00000573051 (MKL2-005) 14200330-14241468 protein_coding
ENST00000573434 (MKL2-010) 14140625-14170470 protein_coding
ENST00000574045 (MKL2-002) 14071339-14261448 protein_coding
ENST00000574998 (MKL2-007) 14071321-14210298 protein_coding
ENST00000575537 (MKL2-009) 14071344-14149536 processed_transcript
ENST00000575768 (MKL2-011) 14140633-14214935 processed_transcript
ENST00000575833 (MKL2-008) 14092837-14141529 processed_transcript
ENSG00000242307 (RPS26P52)
ribosomal protein S26 pseudogene 52 		ENST00000463867 (RPS26P52-001) 13922332-13922679 processed_pseudogene
ENSG00000261856 (CTD-2135D7.4)
 ENST00000575767 (CTD-2135D7.4-001) 14018880-14021077 lincRNA
ENSG00000262097 (CTD-2135D7.5)
 ENST00000575424 (CTD-2135D7.5-001) 14009280-14016016 lincRNA
ENST00000576797 (CTD-2135D7.5-002) 14013031-14016001 lincRNA
ENSG00000262529 (CTA-276F8.2)
 ENST00000570581 (CTA-276F8.2-001) 14191820-14200277 antisense
ENSG00000262732 (CTD-2135D7.2)
 ENST00000570663 (CTD-2135D7.2-001) 13930677-13935635 antisense
ENST00000575137 (CTD-2135D7.2-002) 13930677-13935610 antisense
ENSG00000263234 (CTD-2135D7.3)
 ENST00000576600 (CTD-2135D7.3-001) 13953155-13954825 lincRNA
ENSG00000276564 (CTA-276F8.1)
 ENST00000618736 (CTA-276F8.1-001) 14150833-14153235 lincRNA
CIL_0002RP_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022545-ENSMUSG00000009569 CGP 10090 16:13109684-13417529
GeneTranscriptPositionBiotype
ENSMUSG00000009569 (Mkl2)
MKL/myocardin-like 2 		ENSMUST00000009713 (Mkl2-003) 13256481-13415063 protein_coding
ENSMUST00000056715 (Mkl2-201) 13265076-13332919 protein_coding
ENSMUST00000115809 (Mkl2-004) 13256506-13332922 protein_coding
ENSMUST00000149359 (Mkl2-001) 13358421-13417529 protein_coding
ENSMUSG00000022545 (Ercc4)
excision repair cross-complementing rodent repair deficiency, complementation group 4 		ENSMUST00000023206 (Ercc4-001) 13109684-13148734 protein_coding
ENSMUST00000129049 (Ercc4-004) 13111794-13150617 nonsense_mediated_decay
ENSMUST00000138527 (Ercc4-002) 13109917-13123849 retained_intron
ENSMUST00000141024 (Ercc4-003) 13109935-13127630 nonsense_mediated_decay
ENSMUST00000156393 (Ercc4-005) 13132391-13144491 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002RP_0001ENSDARG00000014161ENSDART00000015780ENSDARG00000088307ENSDART00000127655ENSDART00000153177CIL_0002RP_0002ENSG00000175595ENST00000311895ENST00000389138ENST00000462862ENST00000573018ENST00000574194ENST00000574781ENST00000575156ENST00000576348ENSG00000186260ENST00000318282ENST00000571589ENST00000571770ENST00000572400ENST00000572567ENST00000572588ENST00000573051ENST00000573434ENST00000574045ENST00000574998ENST00000575537ENST00000575768ENST00000575833ENSG00000242307ENST00000463867ENSG00000261856ENST00000575767ENSG00000262097ENST00000575424ENST00000576797ENSG00000262529ENST00000570581ENSG00000262732ENST00000570663ENST00000575137ENSG00000263234ENST00000576600ENSG00000276564ENST00000618736CIL_0002RP_0003ENSMUSG00000009569ENSMUST00000009713ENSMUST00000056715ENSMUST00000115809ENSMUST00000149359ENSMUSG00000022545ENSMUST00000023206ENSMUST00000129049ENSMUST00000138527ENSMUST00000141024ENSMUST00000156393
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002RP_0001ENSDARG00000014161ENSDART00000015780ENSDARG00000088307ENSDART00000127655ENSDART00000153177CIL_0002RP_0002ENSG00000175595ENST00000311895ENST00000462862ENSG00000186260ENST00000318282ENST00000571589ENST00000572400ENST00000572567ENST00000572588ENST00000573051ENSG00000242307ENST00000463867ENSG00000261856ENST00000575767ENSG00000262097ENST00000575424ENST00000576797ENSG00000262529ENST00000570581ENSG00000262732ENST00000570663ENST00000575137ENSG00000263234ENST00000576600ENSG00000276564ENST00000618736CIL_0002RP_0003ENSMUSG00000009569ENSMUST00000009713ENSMUST00000149359ENSMUSG00000022545ENSMUST00000023206ENSMUST00000129049
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000014161 ENSDART00000015780 N/A N/A N/A 1.918±1.53 N/A N/A 1.253±0.43 1.649±1.50 0.185±0.00 N/A 0.417±0.00 N/A N/A N/A
ENSDARG00000088307 ENSDART00000127655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A N/A N/A
ENSDART00000153177 N/A N/A N/A 0.609±0.24 N/A N/A 0.468±0.11 0.273±0.21 0.238±0.00 N/A 0.145±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000175595 ENST00000311895 0.583±0.00 0.513±0.00 0.574±0.00 1.201±0.22 0.258±0.00 0.630±0.15 0.863±0.25 0.248±0.00 0.883±0.48 0.838±0.60 0.478±0.00 0.518±0.38 0.526±0.15 1.843±0.21
ENST00000389138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.387±0.00 N/A N/A N/A
ENST00000573018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000186260 ENST00000318282 N/A 1.568±0.00 N/A N/A 1.552±0.00 N/A N/A N/A N/A N/A 2.047±0.00 0.763±0.04 0.824±0.00 1.646±0.64
ENST00000571589 4.604±0.00 1.905±0.00 N/A 9.921±0.00 1.305±0.32 1.952±0.00 3.416±0.00 1.196±0.00 0.941±0.26 1.842±0.04 0.907±0.00 2.268±2.12 1.044±0.15 2.874±0.09
ENST00000571770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572400 N/A N/A 1.469±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572567 N/A N/A N/A N/A 3.110±0.00 2.170±0.00 0.807±0.00 N/A 2.211±0.00 5.879±3.15 N/A 1.329±0.00 N/A N/A
ENST00000572588 N/A N/A N/A N/A N/A 0.961±0.00 N/A 0.776±0.00 1.151±0.00 1.616±0.00 0.202±0.00 0.755±0.36 N/A N/A
ENST00000573051 N/A N/A 1.329±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242307 ENST00000463867 N/A 0.098±0.00 N/A 0.203±0.00 0.182±0.03 N/A 0.044±0.00 0.297±0.00 N/A 0.047±0.00 N/A 0.419±0.00 N/A 0.405±0.00
ENSG00000261856 ENST00000575767 N/A 0.015±0.00 N/A 0.063±0.00 N/A 0.137±0.00 0.028±0.00 N/A N/A N/A N/A 0.083±0.07 N/A 0.343±0.03
ENSG00000262097 ENST00000575424 0.569±0.00 0.744±0.00 N/A 0.030±0.00 0.517±0.16 0.241±0.16 0.512±0.00 N/A 0.402±0.00 0.793±0.26 0.144±0.00 0.033±0.01 0.241±0.16 0.073±0.00
ENST00000576797 N/A N/A N/A N/A 0.241±0.00 0.270±0.00 0.059±0.00 0.283±0.00 0.119±0.00 0.904±0.00 0.077±0.00 N/A N/A 0.251±0.15
ENSG00000262529 ENST00000570581 0.107±0.00 N/A N/A 0.168±0.00 0.130±0.11 N/A 0.138±0.00 0.024±0.00 N/A N/A N/A 0.212±0.00 N/A 0.208±0.12
ENSG00000262732 ENST00000570663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.084±0.00 10.872±0.00 19.820±0.00
ENST00000575137 0.204±0.00 N/A 0.175±0.00 0.596±0.07 0.399±0.14 N/A 0.192±0.00 0.260±0.01 0.810±0.00 0.527±0.00 0.267±0.00 N/A N/A 2.848±2.14
ENSG00000263234 ENST00000576600 0.196±0.00 0.614±0.00 N/A 0.086±0.00 0.141±0.00 N/A 0.041±0.00 0.125±0.00 0.110±0.00 N/A N/A 0.069±0.03 0.364±0.00 0.275±0.02
ENSG00000276564 ENST00000618736 0.099±0.00 0.276±0.00 0.238±0.00 0.642±0.14 0.595±0.32 0.859±0.72 0.244±0.15 0.266±0.19 0.049±0.00 1.042±0.91 0.103±0.09 0.254±0.07 0.090±0.03 0.400±0.24
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000009569 ENSMUST00000009713 N/A 1.607±0.64 N/A N/A N/A 1.245±0.00 N/A N/A N/A 1.509±0.32 N/A 1.132±0.16 N/A 1.561±0.88
ENSMUST00000056715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149359 3.075±2.36 3.439±0.68 1.317±0.00 5.890±3.72 2.597±1.45 2.803±1.32 1.135±0.00 0.566±0.25 0.835±0.50 6.321±1.80 1.188±0.60 3.356±1.64 3.317±1.00 3.247±0.21
ENSMUSG00000022545 ENSMUST00000023206 4.604±0.16 9.181±1.77 3.936±0.38 5.322±1.11 7.244±1.36 5.580±0.90 2.500±0.22 4.375±1.22 2.012±0.62 5.983±0.64 1.149±0.10 7.991±2.48 3.265±0.81 17.421±4.64
ENSMUST00000129049 0.892±0.00 1.947±0.57 2.143±0.13 1.298±0.39 1.780±0.98 1.089±0.20 0.297±0.00 1.219±0.37 0.331±0.06 1.030±0.00 0.258±0.13 1.234±0.39 0.463±0.12 0.705±0.00
ENSMUST00000138527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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