C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IX, alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129090 Col9a3-002 ENSMUSG00000027570 10090 + 2:180603185-180613415 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000129090
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000129090 0.073±0.01 0.086±0.05 0.576±0.00 0.078±0.02 0.099±0.00 0.025±0.00 0.046±0.00 0.080±0.00 0.255±0.07 0.499±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001O6 CIL_0001O6_0002 CGP 2:180589245-180622189
CIL_0001O1 CIL_0001O1_0002 CGP 2:180597790-180642708

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343916 COL9A3-001 protein_coding Homo_sapiens 0 972
ENST00000463487 COL9A3-015 processed_transcript Homo_sapiens 0 457
ENST00000489045 COL9A3-004 processed_transcript Homo_sapiens 0 429

Loading