C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: excision repaiross-complementing rodent repair deficiency, complementation group 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129117 Ercc8-004 ENSMUSG00000021694 10090 + 13:108158738-108177248 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonOvaryPlacentaTestisENSMUST00000129117
Transcript ID Adrenal Colon Ovary Placenta Testis
ENSMUST00000129117 0.819±0.23 0.678±0.00 0.881±0.30 0.289±0.11 0.445±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LG CIL_0004LG_0002 CGP 13:108052590-108195364
CIL_0001YO CIL_0001YO_0002 CGP 13:108158731-108287105

Gene Ontology

GO IDEvidence TypeGO Description
GO:0009411 IMP response to UV
GO:0010165 IMP response to X-ray

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265038 ERCC8-001 protein_coding Homo_sapiens 0 470
ENST00000381118 ERCC8-003 nonsense_mediated_decay Homo_sapiens 0 470
ENST00000439176 ERCC8-005 protein_coding Homo_sapiens 0 412
ENST00000462279 ERCC8-004 processed_transcript Homo_sapiens 0 302
ENST00000477893 ERCC8-006 retained_intron Homo_sapiens 3.00018e-42 176
ENST00000484330 ERCC8-007 processed_transcript Homo_sapiens 1.99965e-42 176
ENST00000495985 ERCC8-008 processed_transcript Homo_sapiens 0 451
ENST00000497892 ERCC8-002 retained_intron Homo_sapiens 0 383

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