C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: endonuclease V
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129327 Endov-005 ENSMUSG00000039850 10090 + 11:119491389-119507751 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000129327
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000129327 3.026±0.32 3.453±0.53 3.388±0.00 5.707±2.08 2.148±0.35 1.921±0.43 1.000±0.08 6.675±1.30 1.204±0.17 2.456±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LC CIL_0002LC_0002 CGP 11:119393100-119511437
CIL_00042I CIL_00042I_0002 CGP 11:119491347-119547753

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IDA magnesium ion binding
GO:0000737 IDA DNA catabolic process, endonucleolytic
GO:0003727 ISS single-stranded RNA binding
GO:0005730 ISS nucleolus
GO:0005737 ISS cytoplasm
GO:0006281 IDA DNA repair
GO:0016888 IDA endodeoxyribonuclease activity, producing 5'-phosphomonoesters
GO:0016891 ISS endoribonuclease activity, producing 5'-phosphomonoesters
GO:0043566 ISS structure-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323854 ENDOV-004 protein_coding Homo_sapiens 0 418
ENST00000517795 ENDOV-006 protein_coding Homo_sapiens 0 368
ENST00000518137 ENDOV-002 protein_coding Homo_sapiens 0 549
ENST00000518901 ENDOV-010 protein_coding Homo_sapiens 0 418
ENST00000518907 ENDOV-009 protein_coding Homo_sapiens 0 331
ENST00000519117 ENDOV-014 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000520136 ENDOV-017 protein_coding Homo_sapiens 0 267
ENST00000520284 ENDOV-008 protein_coding Homo_sapiens 0 333
ENST00000520367 ENDOV-001 protein_coding Homo_sapiens 0 418
ENST00000520484 ENDOV-012 nonsense_mediated_decay Homo_sapiens 0 364
ENST00000522200 ENDOV-018 protein_coding Homo_sapiens 0 512
ENST00000522577 ENDOV-015 nonsense_mediated_decay Homo_sapiens 0 370
ENST00000522751 ENDOV-005 protein_coding Homo_sapiens 0 418
ENST00000523828 ENDOV-020 protein_coding Homo_sapiens 0 231

Loading