C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoid X receptor alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129514 Rxra-004 ENSMUSG00000015846 10090 + 2:27676440-27741898 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalENSMUST00000129514
Transcript ID Adrenal
ENSMUST00000129514 25.007±3.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000151 CIL_000151_0002 CGP 2:27515157-27762957
CIL_000152 CIL_000152_0002 CGP 2:27676440-28039514

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0001701 IGI in utero embryonic development
GO:0001890 IMP placenta development
GO:0001893 IGI maternal placenta development
GO:0003677 IDA DNA binding
GO:0003700 IGI sequence-specific DNA binding transcription factor activity
GO:0004879 IDA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0004886 IDA 9-cis retinoic acid receptor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006357 IGI regulation of transcription from RNA polymerase II promoter
GO:0007507 IMP heart development
GO:0007566 IGI embryo implantation
GO:0008270 IEA zinc ion binding
GO:0031490 IDA chromatin DNA binding
GO:0043010 IGI camera-type eye development
GO:0043565 IGI sequence-specific DNA binding
GO:0045893 IGI positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0045994 IGI positive regulation of translational initiation by iron
GO:0048384 IDA retinoic acid receptor signaling pathway
GO:0055010 IMP ventricular cardiac muscle tissue morphogenesis
GO:0055012 IGI ventricular cardiac muscle cell differentiation
GO:0060038 IGI cardiac muscle cell proliferation
GO:0060528 IMP secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development
GO:0060687 IMP regulation of branching involved in prostate gland morphogenesis
GO:1901522 IDA positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus

Homologs

No Homologs available.

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