C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000152_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000186350-ENSG00000130635 CGP 9606 9:134317098-134844843
GeneTranscriptPositionBiotype
ENSG00000130635 (COL5A1)
collagen, type V, alpha 1 		ENST00000371817 (COL5A1-001) 134641774-134844843 protein_coding
ENST00000371820 (COL5A1-003) 134824644-134835204 protein_coding
ENST00000460264 (COL5A1-002) 134822922-134830353 retained_intron
ENST00000463925 (COL5A1-009) 134808961-134810457 processed_transcript
ENST00000464187 (COL5A1-004) 134653185-134709227 processed_transcript
ENST00000465877 (COL5A1-007) 134824722-134832876 retained_intron
ENST00000469093 (COL5A1-008) 134731593-134732669 processed_transcript
ENST00000618395 (COL5A1-201) 134641805-134844840 protein_coding
ENSG00000204011 (COL5A1-AS1)
COL5A1 antisense RNA 1 		ENST00000371813 (COL5A1-AS1-001) 134649385-134652843 antisense
ENSG00000223795 (RP11-473E2.2)
 ENST00000444936 (RP11-473E2.2-001) 134505472-134521442 lincRNA
ENSG00000228877 (RP11-473E2.4)
 ENST00000435284 (RP11-473E2.4-001) 134527182-134545244 lincRNA
ENSG00000263897 (MIR4669)
microRNA 4669 		ENST00000585099 (MIR4669-201) 134379411-134379472 miRNA
CIL_000152_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000015846-ENSMUSG00000026837 CGP 10090 2:27676440-28039514
GeneTranscriptPositionBiotype
ENSMUSG00000015846 (Rxra)
retinoid X receptor alpha 		ENSMUST00000077257 (Rxra-001) 27677201-27762957 protein_coding
ENSMUST00000100251 (Rxra-002) 27709292-27760183 protein_coding
ENSMUST00000113934 (Rxra-003) 27710583-27760183 protein_coding
ENSMUST00000129514 (Rxra-004) 27676440-27741898 protein_coding
ENSMUST00000148756 (Rxra-005) 27740201-27748671 processed_transcript
ENSMUST00000166775 (Rxra-201) 27677262-27761417 protein_coding
ENSMUSG00000026837 (Col5a1)
collagen, type V, alpha 1 		ENSMUST00000028280 (Col5a1-001) 27886425-28039514 protein_coding
ENSMUST00000145423 (Col5a1-002) 28017441-28037015 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000152_0001ENSG00000130635ENST00000371817ENST00000371820ENST00000460264ENST00000463925ENST00000464187ENST00000465877ENST00000469093ENST00000618395ENSG00000204011ENST00000371813ENSG00000223795ENST00000444936ENSG00000228877ENST00000435284ENSG00000263897ENST00000585099CIL_000152_0002ENSMUSG00000015846ENSMUST00000077257ENSMUST00000100251ENSMUST00000113934ENSMUST00000129514ENSMUST00000148756ENSMUST00000166775ENSMUSG00000026837ENSMUST00000028280ENSMUST00000145423
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000152_0001ENSG00000130635ENST00000371817ENST00000371820ENST00000460264ENST00000618395ENSG00000204011ENST00000371813ENSG00000223795ENST00000444936ENSG00000228877ENST00000435284ENSG00000263897ENST00000585099CIL_000152_0002ENSMUSG00000015846ENSMUST00000077257ENSMUST00000100251ENSMUST00000113934ENSMUST00000129514ENSMUST00000166775ENSMUSG00000026837ENSMUST00000028280
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130635 ENST00000371817 5.551±0.00 9.747±0.00 0.269±0.00 N/A 16.544±9.55 5.544±2.12 1.633±1.20 4.799±0.00 3.035±2.33 2.949±2.46 0.403±0.00 23.342±17.23 76.962±10.15 6.440±4.70
ENST00000371820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.237±0.00
ENST00000460264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 226.347±0.00 N/A
ENST00000463925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618395 N/A N/A N/A 0.154±0.07 N/A 0.955±0.00 N/A N/A 1.030±0.17 N/A 1.012±0.00 0.835±0.00 N/A N/A
ENSG00000204011 ENST00000371813 N/A 0.116±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A
ENSG00000223795 ENST00000444936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.078±0.00
ENSG00000228877 ENST00000435284 0.100±0.00 N/A N/A 0.129±0.06 N/A 0.478±0.00 N/A N/A N/A 0.231±0.00 N/A N/A 0.077±0.00 0.240±0.09
ENSG00000263897 ENST00000585099 N/A N/A N/A N/A N/A N/A N/A N/A 0.657±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000015846 ENSMUST00000077257 31.737±12.64 18.099±1.93 30.459±0.24 3.064±1.68 27.828±9.75 21.374±2.64 7.553±3.56 19.593±7.49 38.352±37.81 20.647±7.10 23.476±7.65 16.044±2.57 26.921±18.30 2.662±0.21
ENSMUST00000100251 14.020±0.00 N/A N/A 3.979±1.68 N/A 6.210±0.00 N/A 12.273±0.00 19.345±16.40 18.313±0.63 N/A 11.320±3.39 25.982±17.88 6.065±1.47
ENSMUST00000113934 8.284±0.00 15.437±3.21 N/A N/A 26.439±7.06 15.960±4.42 N/A 11.747±1.94 N/A N/A N/A 17.240±4.39 N/A 13.086±3.01
ENSMUST00000129514 N/A 25.007±3.87 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166775 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.206±0.80 N/A N/A
ENSMUSG00000026837 ENSMUST00000028280 25.044±6.96 7.094±2.13 18.222±0.17 4.805±2.17 19.001±5.72 8.033±2.41 3.272±1.99 2.465±0.49 3.114±2.26 3.785±2.10 2.162±1.05 13.327±3.19 11.173±5.84 1.756±0.79
ENSMUST00000145423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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