C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptopodin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130044 Synpo-003 ENSMUSG00000043079 10090 - 18:60593982-60624573 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000130044
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000130044 5.368±1.37 10.886±0.88 1.840±0.44 0.681±0.01 9.731±2.13 13.883±3.18 18.947±5.04 0.731±0.28 13.070±5.36 42.726±18.52 3.851±2.63 1.871±0.70

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IDA actin binding
GO:0005737 IEA cytoplasm
GO:0005923 IEA tight junction
GO:0015629 IDA actin cytoskeleton
GO:0030425 ISO dendrite
GO:0030865 NAS cortical cytoskeleton organization
GO:0032233 IEA positive regulation of actin filament bundle assembly
GO:0043197 NAS dendritic spine
GO:0045211 IEA postsynaptic membrane
GO:0051492 IDA regulation of stress fiber assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307662 SYNPO-001 protein_coding Homo_sapiens 0 1766
ENST00000394243 SYNPO-002 protein_coding Homo_sapiens 0 1766
ENST00000518872 SYNPO-005 processed_transcript Homo_sapiens 0 213
ENST00000519664 SYNPO-004 protein_coding Homo_sapiens 0 1766
ENST00000522122 SYNPO-003 protein_coding Homo_sapiens 0 1766

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