C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptopodin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130360 Synpo-002 ENSMUSG00000043079 10090 - 18:60593990-60629853 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverLungOvaryPlacentaENSMUST00000130360
Transcript ID Adrenal Brain Breast Colon Liver Lung Ovary Placenta
ENSMUST00000130360 2.018±0.00 0.219±0.00 2.685±0.79 4.747±0.61 0.275±0.08 3.402±0.00 16.729±4.12 0.884±0.10

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0015629 IDA actin cytoskeleton
GO:0030425 ISO dendrite
GO:0032233 IEA positive regulation of actin filament bundle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307662 SYNPO-001 protein_coding Homo_sapiens 0 1766
ENST00000394243 SYNPO-002 protein_coding Homo_sapiens 0 1940
ENST00000518872 SYNPO-005 processed_transcript Homo_sapiens 0 213
ENST00000519664 SYNPO-004 protein_coding Homo_sapiens 0 1766
ENST00000522122 SYNPO-003 protein_coding Homo_sapiens 0 1940

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