C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC22 vesicle trafficking protein homolog B (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130778 Sec22b-002 ENSMUSG00000027879 10090 + 3:97901216-97921851 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000130778
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000130778 17.441±1.36 13.150±1.33 21.675±2.71 11.908±3.84 12.901±6.33 6.194±0.52 8.124±1.05 11.370±2.90 13.122±4.31 11.016±1.20 4.504±0.43 10.399±7.09 49.659±4.83 7.143±0.75

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IDA Golgi membrane
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006888 TAS ER to Golgi vesicle-mediated transport
GO:0016192 IDA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128991 sec22bb-201 protein_coding Danio_rerio 0 412
ENSDART00000136856 sec22bb-001 protein_coding Danio_rerio 0 412
ENSDART00000139837 sec22bb-002 protein_coding Danio_rerio 2e-25 121
ENST00000578049 SEC22B-001 protein_coding Homo_sapiens 0 1280
ENST00000616023 CH17-478G19.2-001 unprocessed_pseudogene Homo_sapiens 0 815
ENST00000618406 CH17-385C13.2-001 unprocessed_pseudogene Homo_sapiens 0 634
ENST00000618538 SEC22B-002 protein_coding Homo_sapiens 1e-39 169
ENST00000618702 SEC22B-001 unprocessed_pseudogene Homo_sapiens 0 815

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