C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | collagen, type VI, alpha 3 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000130846  |
Col6a3-002 |
ENSMUSG00000048126 |
10090 | - |
1:90802473-90843928  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008L9 | CIL_0008L9_0002 | VISTA | 1:90453497-91055787 |
| CIL_0000XQ | CIL_0000XQ_0002 | CGP | 1:90602981-90843971 |
| CIL_0007RW | CIL_0007RW_0002 | VISTA | 1:90676298-91284359 |
| CIL_000439 | CIL_000439_0002 | CGP | 1:90765923-90951142 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005581 | IDA | collagen trimer |
| GO:0005615 | IDA | extracellular space |
| GO:0031012 | IDA | extracellular matrix |
| GO:0042383 | IDA | sarcolemma |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000295550
|
COL6A3-001 | protein_coding | Homo_sapiens | 0 | 4926 |
|
ENST00000347401
|
COL6A3-201 | protein_coding | Homo_sapiens | 0 | 586 |
|
ENST00000353578
|
COL6A3-202 | protein_coding | Homo_sapiens | 0 | 4095 |
|
ENST00000392003
|
COL6A3-003 | protein_coding | Homo_sapiens | 0 | 2625 |
|
ENST00000392004
|
COL6A3-002 | protein_coding | Homo_sapiens | 0 | 3336 |
|
ENST00000409809
|
COL6A3-011 | protein_coding | Homo_sapiens | 0 | 4095 |
|
ENST00000433762
|
COL6A3-008 | protein_coding | Homo_sapiens | 0 | 2128 |
|
ENST00000472056
|
COL6A3-012 | protein_coding | Homo_sapiens | 0 | 586 |
|
ENST00000491233
|
COL6A3-004 | protein_coding | Homo_sapiens | 0 | 577 |
