C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type VI, alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295550 COL6A3-001 ENSG00000163359 9606 - 2:237324012-237414375 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000295550
Transcript ID Muscle
ENST00000295550 1.309±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L9 CIL_0008L9_0001 VISTA 2:237013177-237616630
CIL_0000XQ CIL_0000XQ_0001 CGP 2:237085312-237414375
CIL_0007RW CIL_0007RW_0001 VISTA 2:237313736-237917924
CIL_000439 CIL_000439_0001 CGP 2:237324003-237555318

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004867 IEA serine-type endopeptidase inhibitor activity
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005589 TAS collagen type VI trimer
GO:0005615 IDA extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007155 IEA cell adhesion
GO:0007411 TAS axon guidance
GO:0007517 TAS muscle organ development
GO:0010951 IEA negative regulation of endopeptidase activity
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IDA extracellular matrix
GO:0031982 IDA vesicle
GO:0042383 IEA sarcolemma
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056925 Col6a3-201 protein_coding Mus_musculus 0 8530
ENSMUST00000188587 Col6a3-202 protein_coding Mus_musculus 0 5806
ENSMUST00000097653 Col6a3-001 protein_coding Mus_musculus 0 5806
ENSMUST00000130846 Col6a3-002 protein_coding Mus_musculus 0 4926
ENSMUST00000187753 Col6a3-006 protein_coding Mus_musculus 1e-35 158

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