C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type VI, alpha 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048126 Col6a3 10090 - 1:90765923-90843971 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056925 Col6a3-201 90765923-90843971 protein_coding
  ENSMUST00000097653 Col6a3-001 90766860-90843952 protein_coding
  ENSMUST00000130846 Col6a3-002 90802473-90843928 protein_coding
  ENSMUST00000136916 Col6a3-004 90791467-90807982 retained_intron
  ENSMUST00000145750 Col6a3-003 90793892-90794721 retained_intron
  ENSMUST00000150769 Col6a3-005 90767389-90773215 retained_intron
  ENSMUST00000187753 Col6a3-006 90822271-90843971 protein_coding
  ENSMUST00000188587 Col6a3-202 90765923-90843971 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056925ENSMUST00000097653ENSMUST00000136916ENSMUST00000150769ENSMUST00000188587
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056925 N/A N/A N/A 0.051±0.00 N/A 2.583±0.00 N/A 0.765±0.01 N/A 5.904±1.14 N/A 9.044±4.65 0.976±0.00 N/A
ENSMUST00000097653 64.917±33.94 2.333±1.18 34.579±0.30 1.384±1.33 29.153±10.35 17.302±6.83 4.882±1.03 3.596±1.09 0.912±0.54 19.685±0.13 2.876±1.24 29.098±14.05 5.875±7.46 1.015±0.50
ENSMUST00000136916 N/A N/A N/A 0.279±0.00 N/A N/A N/A N/A N/A N/A N/A 17.734±0.00 1.063±0.00 0.459±0.00
ENSMUST00000150769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 53.127±0.00 5.163±3.45 1.856±0.00
ENSMUST00000188587 N/A 2.446±1.03 N/A N/A 15.616±1.18 10.065±0.00 N/A N/A N/A 14.647±0.29 N/A 21.594±0.50 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L9 CIL_0008L9_0002 VISTA 1:90453497-91055787
CIL_0000XQ CIL_0000XQ_0002 CGP 1:90602981-90843971
CIL_0007RW CIL_0007RW_0002 VISTA 1:90676298-91284359
CIL_000439 CIL_000439_0002 CGP 1:90765923-90951142

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004867 IEA serine-type endopeptidase inhibitor activity
GO:0005581 IDA collagen trimer
GO:0005615 IDA extracellular space
GO:0010951 IEA negative regulation of endopeptidase activity
GO:0031012 IDA extracellular matrix
GO:0031982 IEA vesicle
GO:0042383 IDA sarcolemma
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077139 col6a3 collagen, type VI, alpha 3 protein_coding Danio_rerio
ENSG00000163359 COL6A3 collagen, type VI, alpha 3 protein_coding Homo_sapiens

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