C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene, 28043
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130871 Gm28043-001 ENSMUSG00000098374 10090 + 17:29614876-29703359 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaENSMUST00000130871
Transcript ID Bladder Brain Liver Muscle Ovary Placenta
ENSMUST00000130871 6.924±0.92 6.542±0.33 5.497±0.87 2.951±0.47 7.468±0.97 6.991±1.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089L CIL_00089L_0002 VISTA 17:29133661-29735358
CIL_0005CZ CIL_0005CZ_0002 CGP 17:29549788-29641664
CIL_0001Z5 CIL_0001Z5_0002 CGP 17:29614876-29705979

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373451 CMTR1-001 protein_coding Homo_sapiens 0 1000
ENST00000455891 CMTR1-002 protein_coding Homo_sapiens 0 571
ENST00000457419 CMTR1-007 protein_coding Homo_sapiens 0 468
ENST00000475364 CMTR1-004 nonsense_mediated_decay Homo_sapiens 0 313
ENST00000493656 CMTR1-003 processed_transcript Homo_sapiens 4e-39 165

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