C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cap methyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373451 CMTR1-001 ENSG00000137200 9606 + 6:37433220-37481506 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373451
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373451 8.104±0.00 10.927±0.00 0.337±0.00 7.996±4.55 4.863±3.43 4.693±3.02 4.660±3.37 9.603±0.00 3.451±2.02 3.991±1.98 5.280±3.41 8.339±3.89 13.394±2.67 26.647±5.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001Z5 CIL_0001Z5_0001 CGP 6:37353972-37482827
CIL_0001Z6 CIL_0001Z6_0001 CGP 6:37433219-37499922

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004483 IDA mRNA (nucleoside-2'-O-)-methyltransferase activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006370 IMP 7-methylguanosine mRNA capping
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation
GO:0080009 IDA mRNA methylation
GO:0097309 IDA cap1 mRNA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024816 Cmtr1-001 protein_coding Mus_musculus 0 2907
ENSMUST00000138939 Cmtr1-002 retained_intron Mus_musculus 0 1212
ENSMUST00000128410 Cmtr1-005 retained_intron Mus_musculus 0 1061
ENSMUST00000130871 Gm28043-001 nonsense_mediated_decay Mus_musculus 0 1000
ENSMUST00000130052 Cmtr1-007 processed_transcript Mus_musculus 0 627
ENSMUST00000172610 Cmtr1-010 retained_intron Mus_musculus 0 521
ENSMUST00000172516 Cmtr1-011 retained_intron Mus_musculus 0 475
ENSMUST00000127695 Cmtr1-008 processed_transcript Mus_musculus 0 289
ENSMUST00000130423 Cmtr1-004 protein_coding Mus_musculus 0 283
ENSMUST00000129864 Cmtr1-006 protein_coding Mus_musculus 0 281
ENSMUST00000137079 Ccdc167-004 nonsense_mediated_decay Mus_musculus 2e-30 139

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