C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005CZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000065491-ENSG00000112130 CGP 9606 6:37257772-37394738
GeneTranscriptPositionBiotype
ENSG00000065491 (TBC1D22B)
TBC1 domain family, member 22B 		ENST00000373491 (TBC1D22B-001) 37257772-37332970 protein_coding
ENSG00000112130 (RNF8)
ring finger protein 8, E3 ubiquitin protein ligase 		ENST00000229866 (RNF8-004) 37354015-37391168 nonsense_mediated_decay
ENST00000373479 (RNF8-001) 37353972-37394738 protein_coding
ENST00000469316 (RNF8-008) 37354073-37368538 nonsense_mediated_decay
ENST00000469731 (RNF8-003) 37354091-37391231 protein_coding
ENST00000479516 (RNF8-005) 37354072-37370247 processed_transcript
ENST00000487950 (RNF8-007) 37354064-37369030 protein_coding
ENST00000494320 (RNF8-006) 37353979-37368874 nonsense_mediated_decay
ENST00000498460 (RNF8-002) 37368876-37391062 protein_coding
ENSG00000275550 (RP4-744I24.4)
 ENST00000614561 (RP4-744I24.4-001) 37295584-37295742 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0005CZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042203-ENSMUSG00000090083 CGP 10090 17:29549788-29641664
GeneTranscriptPositionBiotype
ENSMUSG00000042203 (Tbc1d22b)
TBC1 domain family, member 22B 		ENSMUST00000048677 (Tbc1d22b-001) 29549788-29606895 protein_coding
ENSMUST00000160114 (Tbc1d22b-002) 29572423-29606894 retained_intron
ENSMUSG00000090083 (Rnf8)
ring finger protein 8 		ENSMUST00000024817 (Rnf8-001) 29614790-29641664 protein_coding
ENSMUST00000161242 (Rnf8-005) 29631532-29641535 retained_intron
ENSMUST00000161952 (Rnf8-002) 29614890-29619557 processed_transcript
ENSMUST00000162417 (Rnf8-004) 29628636-29635929 retained_intron
ENSMUST00000162588 (Rnf8-003) 29614822-29627040 protein_coding
ENSMUST00000172485 (Rnf8-007) 29614854-29641587 nonsense_mediated_decay
ENSMUST00000172800 (Rnf8-008) 29634486-29641556 retained_intron
ENSMUST00000173449 (Rnf8-009) 29616136-29627073 protein_coding
ENSMUSG00000098374 (Gm28043)
predicted gene, 28043 		ENSMUST00000130871 (Gm28043-001) 29614876-29703359 nonsense_mediated_decay
ENSMUSG00000099329 (Gm28052)
predicted gene, 28052 		ENSMUST00000150388 (Gm28052-001) 29549799-29674187 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005CZ_0001ENSG00000065491ENST00000373491ENSG00000112130ENST00000229866ENST00000373479ENST00000469316ENST00000469731ENST00000479516ENST00000487950ENST00000494320ENST00000498460ENSG00000275550ENST00000614561CIL_0005CZ_0002ENSMUSG00000042203ENSMUST00000048677ENSMUST00000160114ENSMUSG00000090083ENSMUST00000024817ENSMUST00000161242ENSMUST00000161952ENSMUST00000162417ENSMUST00000162588ENSMUST00000172485ENSMUST00000172800ENSMUST00000173449ENSMUSG00000098374ENSMUST00000130871ENSMUSG00000099329ENSMUST00000150388
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005CZ_0001ENSG00000065491ENST00000373491ENSG00000112130ENST00000229866ENST00000373479ENST00000469731ENST00000479516ENST00000487950ENST00000498460ENSG00000275550ENST00000614561CIL_0005CZ_0002ENSMUSG00000042203ENSMUST00000048677ENSMUSG00000090083ENSMUST00000024817ENSMUST00000172485ENSMUSG00000098374ENSMUST00000130871ENSMUSG00000099329ENSMUST00000150388
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000065491 ENST00000373491 1.658±0.00 2.549±0.00 N/A 3.074±0.00 2.100±0.72 1.428±0.76 1.806±0.00 2.795±2.63 0.781±0.06 5.616±0.00 5.906±0.00 4.251±2.05 3.916±0.43 8.245±0.32
ENSG00000112130 ENST00000229866 2.201±0.00 1.769±0.00 N/A 3.487±2.12 1.498±1.14 2.441±1.94 1.674±1.16 2.534±2.36 1.033±0.21 1.337±0.92 0.684±0.12 5.319±3.90 4.647±3.49 16.318±7.83
ENST00000373479 N/A N/A N/A 0.314±0.00 N/A N/A 0.230±0.00 N/A N/A 0.210±0.00 0.098±0.00 0.685±0.00 N/A 0.658±0.00
ENST00000469316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469731 0.908±0.00 2.816±0.00 0.523±0.00 2.540±0.22 0.965±0.46 2.331±0.99 1.559±1.21 1.387±1.16 1.767±0.00 2.771±1.52 1.329±0.00 3.092±0.06 2.210±0.25 5.684±0.26
ENST00000479516 N/A N/A 1.078±0.00 N/A 0.628±0.00 0.760±0.00 N/A N/A 0.579±0.00 N/A N/A 0.724±0.00 N/A N/A
ENST00000487950 N/A N/A N/A N/A N/A N/A N/A N/A 1.462±0.00 N/A N/A N/A N/A N/A
ENST00000494320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498460 N/A 2.918±0.00 0.721±0.00 N/A 1.702±0.00 N/A N/A N/A N/A N/A 1.305±0.00 N/A N/A N/A
ENSG00000275550 ENST00000614561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.619±0.00 N/A 0.699±0.00 0.087±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042203 ENSMUST00000048677 9.116±0.35 15.672±1.65 10.495±1.15 17.152±2.92 11.402±0.86 13.925±0.71 8.000±0.77 12.531±2.93 4.758±0.00 9.944±1.62 4.952±0.69 12.183±2.47 14.066±6.20 12.921±5.16
ENSMUST00000160114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090083 ENSMUST00000024817 17.791±0.67 N/A N/A 18.313±0.00 N/A 17.766±0.75 N/A 13.658±0.52 14.952±3.60 17.665±0.76 6.472±0.74 26.085±9.98 13.155±1.33 N/A
ENSMUST00000161242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172485 N/A 37.743±5.11 N/A N/A N/A 20.691±2.04 N/A N/A 12.626±0.00 N/A N/A 28.943±4.59 N/A N/A
ENSMUST00000172800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098374 ENSMUST00000130871 N/A N/A 6.924±0.92 6.542±0.33 N/A N/A N/A N/A 5.497±0.87 N/A 2.951±0.47 7.468±0.97 6.991±1.97 N/A
ENSMUSG00000099329 ENSMUST00000150388 N/A 110.487±23.30 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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