C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IX, alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000132527 Col9a3-001 ENSMUSG00000027570 10090 + 2:180597790-180622189 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonOvaryENSMUST00000132527
Transcript ID Adipose Adrenal Colon Ovary
ENSMUST00000132527 0.142±0.00 0.071±0.02 0.202±0.00 0.182±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001O6 CIL_0001O6_0002 CGP 2:180589245-180622189
CIL_0001O1 CIL_0001O1_0002 CGP 2:180597790-180642708

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005594 IEA collagen type IX trimer
GO:0008584 IEP male gonad development
GO:0008585 IEP female gonad development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343916 COL9A3-001 protein_coding Homo_sapiens 0 1923
ENST00000463487 COL9A3-015 processed_transcript Homo_sapiens 0 457
ENST00000489045 COL9A3-004 processed_transcript Homo_sapiens 0 712

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