C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (sem
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133554 Sema5b-002 ENSMUSG00000052133 10090 + 16:35541145-35648140 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalLiverLungMuscleENSMUST00000133554
Transcript ID Adrenal Liver Lung Muscle
ENSMUST00000133554 4.330±1.99 0.019±0.00 0.038±0.00 0.020±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008J4 CIL_0008J4_0002 VISTA 16:35298618-35902946

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000087661 sema5bb-001 protein_coding Danio_rerio 0 233
ENST00000195173 SEMA5B-201 protein_coding Homo_sapiens 0 721
ENST00000357599 SEMA5B-001 protein_coding Homo_sapiens 0 691
ENST00000393583 SEMA5B-003 protein_coding Homo_sapiens 0 691
ENST00000421053 SEMA5B-005 protein_coding Homo_sapiens 0 329
ENST00000451055 SEMA5B-202 protein_coding Homo_sapiens 0 691
ENST00000465147 SEMA5B-006 processed_transcript Homo_sapiens 0 542
ENST00000475244 SEMA5B-002 nonsense_mediated_decay Homo_sapiens 0 691
ENST00000477001 SEMA5B-007 processed_transcript Homo_sapiens 5.00264e-43 178
ENST00000616742 SEMA5B-203 protein_coding Homo_sapiens 0 691

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