C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 57
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133612 Lrrc57-005 ENSMUSG00000027286 10090 - 2:120605970-120609508 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000133612
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000133612 3.402±0.60 2.467±0.62 3.203±2.39 1.884±0.18 2.759±0.31 2.251±0.31 2.057±0.41 2.915±0.18 2.357±0.61 81.619±19.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PJ CIL_0005PJ_0002 CGP 2:120567671-120609520
CIL_0005PI CIL_0005PI_0002 CGP 2:120604238-120621560

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323443 LRRC57-001 protein_coding Homo_sapiens 0 835
ENST00000397130 LRRC57-002 protein_coding Homo_sapiens 0 867
ENST00000563454 LRRC57-003 protein_coding Homo_sapiens 0 832
ENST00000569830 LRRC57-004 retained_intron Homo_sapiens 0 387
ENST00000570160 LRRC57-005 protein_coding Homo_sapiens 0 599

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