C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cDNA sequence BC030867
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133930 BC030867-001 ENSMUSG00000034773 10090 + 11:102248882-102265187 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderHeartLungOvaryPlacentaTestisENSMUST00000133930
Transcript ID Adrenal Bladder Heart Lung Ovary Placenta Testis
ENSMUST00000133930 0.079±0.00 0.055±0.00 0.052±0.03 0.034±0.00 0.236±0.04 0.106±0.00 1.696±0.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0005J4 CIL_0005J4_0002 CGP 11:102194432-102265187
CIL_0005J3 CIL_0005J3_0002 CGP 11:102248882-102279462

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000245382 C17orf53-003 protein_coding Homo_sapiens 0 381
ENST00000319977 C17orf53-002 protein_coding Homo_sapiens 0 737
ENST00000585683 C17orf53-001 protein_coding Homo_sapiens 0 752
ENST00000588073 C17orf53-005 retained_intron Homo_sapiens 0 394

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