C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134327 Imp4-005 ENSMUSG00000026127 10090 + 1:34439937-34444027 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverOvaryPlacentaENSMUST00000134327
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Ovary Placenta
ENSMUST00000134327 18.211±0.00 21.169±1.41 15.993±0.85 14.432±1.41 8.012±0.00 19.685±3.56 16.578±6.75 23.958±2.22 26.245±3.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001J7 CIL_0001J7_0002 CGP 1:34436670-34449356
CIL_0001J6 CIL_0001J6_0002 CGP 1:34439851-34475733

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259239 IMP4-001 protein_coding Homo_sapiens 0 702
ENST00000409649 IMP4-010 protein_coding Homo_sapiens 0 704
ENST00000409935 IMP4-002 protein_coding Homo_sapiens 0 702
ENST00000428740 IMP4-012 protein_coding Homo_sapiens 0 649
ENST00000456713 IMP4-013 nonsense_mediated_decay Homo_sapiens 0 407
ENST00000460766 IMP4-004 retained_intron Homo_sapiens 0 704
ENST00000462392 IMP4-003 retained_intron Homo_sapiens 0 479
ENST00000464432 IMP4-005 retained_intron Homo_sapiens 0 340
ENST00000470672 IMP4-007 retained_intron Homo_sapiens 0 215
ENST00000473689 IMP4-006 retained_intron Homo_sapiens 0 477
ENST00000477375 IMP4-008 retained_intron Homo_sapiens 0 479
ENST00000490895 IMP4-009 retained_intron Homo_sapiens 0 342
ENST00000495606 IMP4-011 retained_intron Homo_sapiens 0 215

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