C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Bardet-Biedl syndrome 5 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000134659 Bbs5-002 ENSMUSG00000063145 10090 + 2:69647171-69667318 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000134659
Transcript ID Adipose Adrenal Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000134659 0.640±0.13 0.444±0.10 0.554±0.31 0.227±0.00 0.319±0.10 0.444±0.00 0.517±0.21 1.279±1.02 5.088±0.00 24.140±17.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HC CIL_0008HC_0002 VISTA 2:69119794-69721610
CIL_00063E CIL_00063E_0002 CGP 2:69424340-69667571

Gene Ontology

GO IDEvidence TypeGO Description
GO:0034464 IDA BBSome
GO:0036064 ISO ciliary basal body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295240 BBS5-001 protein_coding Homo_sapiens 0 857
ENST00000392663 BBS5-002 protein_coding Homo_sapiens 0 496
ENST00000443151 BBS5-005 nonsense_mediated_decay Homo_sapiens 0 311
ENST00000472667 BBS5-003 retained_intron Homo_sapiens 0 499
ENST00000513963 RP11-724O16.1-001 protein_coding Homo_sapiens 0 691

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