C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: topoisomerase (DNA) III beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135597 Top3b-002 ENSMUSG00000022779 10090 + 16:16870817-16892990 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonLiverMusclePlacentaENSMUST00000135597
Transcript ID Adipose Bladder Breast Colon Liver Muscle Placenta
ENSMUST00000135597 4.549±0.00 3.361±0.00 3.389±0.00 3.452±0.13 2.515±0.09 0.885±0.00 3.651±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PT CIL_0008PT_0002 VISTA 16:16870677-17470725

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357179 TOP3B-001 protein_coding Homo_sapiens 0 1489
ENST00000398793 TOP3B-003 protein_coding Homo_sapiens 0 1489
ENST00000420768 TOP3BP1-001 processed_pseudogene Homo_sapiens 0 499
ENST00000424393 TOP3B-012 protein_coding Homo_sapiens 0 891
ENST00000430142 TOP3B-007 protein_coding Homo_sapiens 0 424
ENST00000436282 TOP3B-005 nonsense_mediated_decay Homo_sapiens 0 580
ENST00000437929 TOP3B-013 protein_coding Homo_sapiens 0 425
ENST00000444502 TOP3B-002 nonsense_mediated_decay Homo_sapiens 0 1042
ENST00000457179 TOP3B-004 nonsense_mediated_decay Homo_sapiens 0 1081
ENST00000457270 TOP3B-006 protein_coding Homo_sapiens 0 791

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