C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polybromo 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135704 Pbrm1-010 ENSMUSG00000042323 10090 + 14:31027478-31085044 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0002 VISTA 14:30932335-31535522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000776 IDA kinetochore
GO:0001890 IMP placenta development
GO:0003682 IDA chromatin binding
GO:0005634 IC nucleus
GO:0007507 IMP heart development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296302 PBRM1-008 protein_coding Homo_sapiens 0 2591
ENST00000337303 PBRM1-009 protein_coding Homo_sapiens 0 2591
ENST00000356770 PBRM1-001 protein_coding Homo_sapiens 0 2591
ENST00000394830 PBRM1-002 protein_coding Homo_sapiens 0 1977
ENST00000409057 PBRM1-003 protein_coding Homo_sapiens 0 2591
ENST00000409114 PBRM1-006 protein_coding Homo_sapiens 0 4619
ENST00000409767 PBRM1-005 protein_coding Homo_sapiens 0 4619
ENST00000410007 PBRM1-007 protein_coding Homo_sapiens 0 1977
ENST00000412587 PBRM1-020 nonsense_mediated_decay Homo_sapiens 0 1954
ENST00000420148 PBRM1-013 protein_coding Homo_sapiens 0 457
ENST00000423351 PBRM1-019 protein_coding Homo_sapiens 0 2606
ENST00000431678 PBRM1-018 protein_coding Homo_sapiens 0 791
ENST00000446103 PBRM1-004 protein_coding Homo_sapiens 0 4634
ENST00000449505 PBRM1-016 protein_coding Homo_sapiens 0 303
ENST00000450271 PBRM1-017 protein_coding Homo_sapiens 1e-34 150
ENST00000462207 PBRM1-010 retained_intron Homo_sapiens 0 1356
ENST00000480064 PBRM1-011 retained_intron Homo_sapiens 0 926

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