C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polybromo 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000423351 PBRM1-019 ENSG00000163939 9606 - 3:52554783-52679714 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonKidneyLiverMuscleOvaryENST00000423351
Transcript ID Bladder Breast Colon Kidney Liver Muscle Ovary
ENST00000423351 1.999±0.00 4.615±0.00 4.576±0.00 2.578±0.00 4.971±0.00 1.582±0.00 4.198±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115
CIL_0002P4 CIL_0002P4_0002 CGP 3:52545352-52694492

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IEA chromatin binding
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000156628 Pbrm1-008 protein_coding Mus_musculus 0 6276
ENSMUST00000112095 Pbrm1-001 protein_coding Mus_musculus 0 6261
ENSMUST00000136237 Pbrm1-005 nonsense_mediated_decay Mus_musculus 0 6235
ENSMUST00000022471 Pbrm1-006 protein_coding Mus_musculus 0 6085
ENSMUST00000090214 Pbrm1-012 protein_coding Mus_musculus 0 6080
ENSMUST00000112094 Pbrm1-003 protein_coding Mus_musculus 0 4785
ENSMUST00000052239 Pbrm1-004 protein_coding Mus_musculus 0 4181
ENSMUST00000022474 Pbrm1-009 protein_coding Mus_musculus 0 3880
ENSMUST00000112098 Pbrm1-201 protein_coding Mus_musculus 0 3877
ENSMUST00000112092 Pbrm1-011 protein_coding Mus_musculus 0 3877
ENSMUST00000123678 Pbrm1-007 nonsense_mediated_decay Mus_musculus 0 3633
ENSMUST00000135704 Pbrm1-010 protein_coding Mus_musculus 0 2606
ENSMUST00000146325 Pbrm1-002 protein_coding Mus_musculus 0 2519
ENSMUST00000156407 Pbrm1-016 retained_intron Mus_musculus 0 638
ENSMUST00000145497 Pbrm1-013 processed_transcript Mus_musculus 0 599
ENSMUST00000112106 Pbrm1-014 protein_coding Mus_musculus 0 342
ENSMUST00000144009 Pbrm1-015 protein_coding Mus_musculus 0 294

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