C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | polybromo 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000296302  |
PBRM1-008 |
ENSG00000163939 |
9606 | - |
3:52547990-52679713  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007WP | CIL_0007WP_0001 | VISTA | 3:52127966-52731115 |
| CIL_0002P4 | CIL_0002P4_0002 | CGP | 3:52545352-52694492 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000228 | NAS | nuclear chromosome |
| GO:0003677 | IEA | DNA binding |
| GO:0003682 | NAS:IEA | chromatin binding |
| GO:0005515 | IPI:IEA | protein binding |
| GO:0006338 | TAS | chromatin remodeling |
| GO:0006351 | IEA | transcription, DNA-templated |
| GO:0006355 | IEA | regulation of transcription, DNA-templated |
| GO:0007067 | TAS | mitotic nuclear division |
| GO:0008285 | IMP | negative regulation of cell proliferation |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000090214
|
Pbrm1-012 | protein_coding | Mus_musculus | 0 | 7387 |
|
ENSMUST00000022471
|
Pbrm1-006 | protein_coding | Mus_musculus | 0 | 6100 |
|
ENSMUST00000112095
|
Pbrm1-001 | protein_coding | Mus_musculus | 0 | 6100 |
|
ENSMUST00000156628
|
Pbrm1-008 | protein_coding | Mus_musculus | 0 | 6080 |
|
ENSMUST00000136237
|
Pbrm1-005 | nonsense_mediated_decay | Mus_musculus | 0 | 6072 |
|
ENSMUST00000112098
|
Pbrm1-201 | protein_coding | Mus_musculus | 0 | 5125 |
|
ENSMUST00000112094
|
Pbrm1-003 | protein_coding | Mus_musculus | 0 | 4626 |
|
ENSMUST00000112092
|
Pbrm1-011 | protein_coding | Mus_musculus | 0 | 4205 |
|
ENSMUST00000052239
|
Pbrm1-004 | protein_coding | Mus_musculus | 0 | 4200 |
|
ENSMUST00000022474
|
Pbrm1-009 | protein_coding | Mus_musculus | 0 | 3897 |
|
ENSMUST00000123678
|
Pbrm1-007 | nonsense_mediated_decay | Mus_musculus | 0 | 3631 |
|
ENSMUST00000135704
|
Pbrm1-010 | protein_coding | Mus_musculus | 0 | 2591 |
|
ENSMUST00000146325
|
Pbrm1-002 | protein_coding | Mus_musculus | 0 | 2540 |
|
ENSMUST00000156407
|
Pbrm1-016 | retained_intron | Mus_musculus | 0 | 638 |
|
ENSMUST00000145497
|
Pbrm1-013 | processed_transcript | Mus_musculus | 0 | 597 |
|
ENSMUST00000112106
|
Pbrm1-014 | protein_coding | Mus_musculus | 0 | 340 |
|
ENSMUST00000144009
|
Pbrm1-015 | protein_coding | Mus_musculus | 0 | 292 |
