C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polybromo 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356770 PBRM1-001 ENSG00000163939 9606 - 3:52545352-52679714 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356770
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356770 8.571±0.00 8.099±0.00 1.172±0.00 2.433±0.00 6.603±2.32 1.709±0.00 4.452±0.00 2.695±0.00 5.440±0.00 1.006±0.00 4.546±1.25 5.354±0.20 3.298±1.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115
CIL_0002P4 CIL_0002P4_0002 CGP 3:52545352-52694492

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 NAS nuclear chromosome
GO:0003677 IEA DNA binding
GO:0003682 NAS:IEA chromatin binding
GO:0005515 IPI:IEA protein binding
GO:0006338 TAS chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007067 TAS mitotic nuclear division
GO:0008285 IMP negative regulation of cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112094 Pbrm1-003 protein_coding Mus_musculus 0 6957
ENSMUST00000112095 Pbrm1-001 protein_coding Mus_musculus 0 5949
ENSMUST00000136237 Pbrm1-005 nonsense_mediated_decay Mus_musculus 0 5581
ENSMUST00000156628 Pbrm1-008 protein_coding Mus_musculus 0 4785
ENSMUST00000022471 Pbrm1-006 protein_coding Mus_musculus 0 4630
ENSMUST00000090214 Pbrm1-012 protein_coding Mus_musculus 0 4626
ENSMUST00000022474 Pbrm1-009 protein_coding Mus_musculus 0 3901
ENSMUST00000112098 Pbrm1-201 protein_coding Mus_musculus 0 3897
ENSMUST00000112092 Pbrm1-011 protein_coding Mus_musculus 0 3897
ENSMUST00000146325 Pbrm1-002 protein_coding Mus_musculus 0 3888
ENSMUST00000123678 Pbrm1-007 nonsense_mediated_decay Mus_musculus 0 3134
ENSMUST00000052239 Pbrm1-004 protein_coding Mus_musculus 0 2726
ENSMUST00000135704 Pbrm1-010 protein_coding Mus_musculus 0 2591
ENSMUST00000156407 Pbrm1-016 retained_intron Mus_musculus 0 638
ENSMUST00000145497 Pbrm1-013 processed_transcript Mus_musculus 0 599
ENSMUST00000112106 Pbrm1-014 protein_coding Mus_musculus 0 342
ENSMUST00000144009 Pbrm1-015 protein_coding Mus_musculus 0 294

Loading