C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polybromo 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042323 Pbrm1 10090 + 14:31019138-31121592 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022471 Pbrm1-006 31025510-31120020 protein_coding
  ENSMUST00000022474 Pbrm1-009 31025510-31118947 protein_coding
  ENSMUST00000052239 Pbrm1-004 31019208-31119119 protein_coding
  ENSMUST00000090214 Pbrm1-012 31025511-31120041 protein_coding
  ENSMUST00000112092 Pbrm1-011 31025510-31118948 protein_coding
  ENSMUST00000112094 Pbrm1-003 31019170-31118967 protein_coding
  ENSMUST00000112095 Pbrm1-001 31019138-31121592 protein_coding
  ENSMUST00000112098 Pbrm1-201 31019138-31118901 protein_coding
  ENSMUST00000112106 Pbrm1-014 31019149-31027530 protein_coding
  ENSMUST00000123678 Pbrm1-007 31025510-31118967 nonsense_mediated_decay
  ENSMUST00000135704 Pbrm1-010 31027478-31085044 protein_coding
  ENSMUST00000136237 Pbrm1-005 31025507-31118966 nonsense_mediated_decay
  ENSMUST00000144009 Pbrm1-015 31019177-31027498 protein_coding
  ENSMUST00000145497 Pbrm1-013 31019199-31032063 processed_transcript
  ENSMUST00000146325 Pbrm1-002 31019157-31082598 protein_coding
  ENSMUST00000156407 Pbrm1-016 31084204-31088040 retained_intron
  ENSMUST00000156628 Pbrm1-008 31025507-31113945 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022471ENSMUST00000022474ENSMUST00000090214ENSMUST00000112092ENSMUST00000112094ENSMUST00000112095ENSMUST00000112098ENSMUST00000146325ENSMUST00000156628
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022471 N/A N/A N/A 1.082±0.00 N/A N/A N/A N/A N/A N/A N/A 1.348±0.00 N/A N/A
ENSMUST00000022474 N/A N/A N/A N/A N/A N/A 1.386±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000090214 N/A N/A N/A 0.769±0.00 N/A N/A N/A N/A 1.515±0.00 N/A N/A 1.541±0.00 3.160±0.00 N/A
ENSMUST00000112092 N/A N/A N/A 1.155±0.00 N/A N/A N/A N/A N/A N/A N/A 2.986±0.00 3.258±0.00 1.133±0.00
ENSMUST00000112094 3.493±0.92 N/A N/A N/A 1.877±0.41 2.640±0.27 N/A 1.801±0.21 1.405±0.00 3.823±0.00 N/A 2.775±0.61 2.782±0.32 1.845±0.00
ENSMUST00000112095 N/A 11.607±2.67 10.666±1.12 17.835±3.95 1.678±0.68 1.917±0.00 2.348±1.13 2.107±0.54 5.883±4.22 4.339±0.64 1.624±1.53 9.166±5.01 7.441±3.32 3.632±1.55
ENSMUST00000112098 2.610±1.02 4.349±0.20 N/A N/A 4.137±2.18 4.568±0.85 N/A 1.329±0.21 0.962±0.07 3.302±0.95 N/A 7.992±1.66 N/A 1.449±0.15
ENSMUST00000146325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.465±0.00 N/A N/A
ENSMUST00000156628 N/A N/A N/A N/A 1.983±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0002 VISTA 14:30932335-31535522

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000776 IDA kinetochore
GO:0001890 IMP placenta development
GO:0001974 TAS blood vessel remodeling
GO:0003007 TAS heart morphogenesis
GO:0003349 TAS epicardium-derived cardiac endothelial cell differentiation
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007507 IMP heart development
GO:0008285 ISS negative regulation of cell proliferation
GO:0016568 IEA chromatin modification
GO:0045893 TAS positive regulation of transcription, DNA-templated
GO:0060948 TAS cardiac vascular smooth muscle cell development
GO:0060979 TAS vasculogenesis involved in coronary vascular morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003877 PBRM1 (1 of 2) polybromo 1 protein_coding Danio_rerio
ENSDARG00000077038 pbrm1l polybromo 1, like protein_coding Danio_rerio
ENSG00000163939 PBRM1 polybromo 1 protein_coding Homo_sapiens

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