C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin sulfate N-acetylgalactosaminyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136060 Csgalnact1-003 ENSMUSG00000036356 10090 - 8:68388643-68735102 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000136060
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000136060 0.869±0.25 0.378±0.00 0.200±0.14 0.622±0.17 0.309±0.09 0.170±0.00 0.522±0.16 0.099±0.04 2.713±0.68 0.242±0.00 1.019±0.46 0.263±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IX CIL_0003IX_0002 CGP 8:68276567-68735146
CIL_0003TM CIL_0003TM_0002 CGP 8:68356781-68829410

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001958 IMP endochondral ossification
GO:0008376 ISS acetylgalactosaminyltransferase activity
GO:0008955 ISS peptidoglycan glycosyltransferase activity
GO:0015020 ISS glucuronosyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0019276 ISS UDP-N-acetylgalactosamine metabolic process
GO:0030198 IMP extracellular matrix organization
GO:0030204 IMP chondroitin sulfate metabolic process
GO:0030206 ISS chondroitin sulfate biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0046398 ISS UDP-glucuronate metabolic process
GO:0046872 IEA metal ion binding
GO:0047237 ISS glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0047238 ISS glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050653 ISS chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process
GO:0051216 IMP cartilage development

Homologs

No Homologs available.

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