C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003TM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000147408-ENSG00000104613 CGP 9606 8:19404161-19852083
GeneTranscriptPositionBiotype
ENSG00000104613 (INTS10)
integrator complex subunit 10 		ENST00000397977 (INTS10-001) 19817140-19852078 protein_coding
ENST00000517546 (INTS10-016) 19848763-19852035 retained_intron
ENST00000518424 (INTS10-003) 19817391-19819653 nonsense_mediated_decay
ENST00000518799 (INTS10-013) 19830519-19845774 protein_coding
ENST00000519493 (INTS10-011) 19832101-19837517 retained_intron
ENST00000520670 (INTS10-018) 19837053-19852083 protein_coding
ENST00000520827 (INTS10-014) 19844128-19852067 nonsense_mediated_decay
ENST00000520985 (INTS10-004) 19817439-19818872 retained_intron
ENST00000521008 (INTS10-012) 19837081-19851674 nonsense_mediated_decay
ENST00000521357 (INTS10-010) 19824838-19844237 nonsense_mediated_decay
ENST00000521758 (INTS10-008) 19817450-19822520 processed_transcript
ENST00000522081 (INTS10-002) 19820949-19824492 retained_intron
ENST00000522114 (INTS10-005) 19817437-19820518 nonsense_mediated_decay
ENST00000522806 (INTS10-006) 19823895-19826488 processed_transcript
ENST00000523143 (INTS10-009) 19824664-19830526 retained_intron
ENST00000523772 (INTS10-015) 19842899-19852061 protein_coding
ENST00000523846 (INTS10-007) 19823388-19832110 protein_coding
ENST00000523869 (INTS10-017) 19817581-19823452 nonsense_mediated_decay
ENST00000607660 (INTS10-019) 19845423-19845914 retained_intron
ENSG00000147408 (CSGALNACT1)
chondroitin sulfate N-acetylgalactosaminyltransferase 1 		ENST00000332246 (CSGALNACT1-001) 19404161-19682583 protein_coding
ENST00000397998 (CSGALNACT1-002) 19404161-19682761 nonsense_mediated_decay
ENST00000454498 (CSGALNACT1-004) 19404161-19602495 protein_coding
ENST00000517494 (CSGALNACT1-006) 19505545-19758029 protein_coding
ENST00000517651 (CSGALNACT1-011) 19505880-19642022 processed_transcript
ENST00000518542 (CSGALNACT1-016) 19420383-19495191 processed_transcript
ENST00000519222 (CSGALNACT1-003) 19439877-19602759 nonsense_mediated_decay
ENST00000520003 (CSGALNACT1-012) 19505674-19602495 protein_coding
ENST00000522573 (CSGALNACT1-008) 19506116-19757217 processed_transcript
ENST00000522732 (CSGALNACT1-015) 19506037-19532020 processed_transcript
ENST00000522854 (CSGALNACT1-005) 19405780-19601865 protein_coding
ENST00000523227 (CSGALNACT1-010) 19505906-19683240 processed_transcript
ENST00000523262 (CSGALNACT1-007) 19505523-19757938 protein_coding
ENST00000523919 (CSGALNACT1-014) 19585286-19602224 processed_transcript
ENST00000524112 (CSGALNACT1-013) 19587874-19602224 processed_transcript
ENST00000524213 (CSGALNACT1-009) 19505792-19757305 protein_coding
ENSG00000253270 (RP11-1105O14.1)
 ENST00000519803 (RP11-1105O14.1-001) 19678572-19688934 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003TM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036356-ENSMUSG00000031864 CGP 10090 8:68356781-68829410
GeneTranscriptPositionBiotype
ENSMUSG00000031864 (Ints10)
integrator complex subunit 10 		ENSMUST00000034328 (Ints10-001) 68793929-68829410 protein_coding
ENSMUST00000070713 (Ints10-006) 68794014-68829408 protein_coding
ENSMUST00000110241 (Ints10-004) 68793935-68822511 protein_coding
ENSMUST00000110242 (Ints10-005) 68793956-68829408 protein_coding
ENSMUST00000140309 (Ints10-008) 68811948-68814612 retained_intron
ENSMUST00000145140 (Ints10-002) 68793974-68798801 retained_intron
ENSMUST00000146322 (Ints10-003) 68793956-68798801 retained_intron
ENSMUST00000147072 (Ints10-007) 68820686-68827501 protein_coding
ENSMUSG00000036356 (Csgalnact1)
chondroitin sulfate N-acetylgalactosaminyltransferase 1 		ENSMUST00000078350 (Csgalnact1-001) 68356781-68735146 protein_coding
ENSMUST00000125727 (Csgalnact1-006) 68557071-68735115 processed_transcript
ENSMUST00000130214 (Csgalnact1-002) 68357967-68735114 protein_coding
ENSMUST00000136060 (Csgalnact1-003) 68388643-68735102 protein_coding
ENSMUST00000139141 (Csgalnact1-004) 68645799-68735115 processed_transcript
ENSMUST00000143586 (Csgalnact1-005) 68461581-68735115 processed_transcript
ENSMUST00000150083 (Csgalnact1-007) 68556972-68735114 processed_transcript
ENSMUSG00000081745 (Gm15549)
predicted gene 15549 		ENSMUST00000121595 (Gm15549-001) 68798867-68799488 processed_pseudogene
ENSMUSG00000085197 (1700125H03Rik)
RIKEN cDNA 1700125H03 gene 		ENSMUST00000124929 (1700125H03Rik-002) 68368434-68372293 antisense
ENSMUST00000139265 (1700125H03Rik-001) 68368466-68375710 antisense
ENSMUSG00000085487 (Gm15654)
predicted gene 15654 		ENSMUST00000152660 (Gm15654-001) 68620138-68620437 unprocessed_pseudogene
ENSMUSG00000087489 (Gm15656)
predicted gene 15656 		ENSMUST00000132076 (Gm15656-001) 68457148-68458681 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003TM_0001ENSG00000104613ENST00000397977ENST00000517546ENST00000518424ENST00000518799ENST00000519493ENST00000520670ENST00000520827ENST00000520985ENST00000521008ENST00000521357ENST00000521758ENST00000522081ENST00000522114ENST00000522806ENST00000523143ENST00000523772ENST00000523846ENST00000523869ENST00000607660ENSG00000147408ENST00000332246ENST00000397998ENST00000454498ENST00000517494ENST00000517651ENST00000518542ENST00000519222ENST00000520003ENST00000522573ENST00000522732ENST00000522854ENST00000523227ENST00000523262ENST00000523919ENST00000524112ENST00000524213ENSG00000253270ENST00000519803CIL_0003TM_0002ENSMUSG00000031864ENSMUST00000034328ENSMUST00000070713ENSMUST00000110241ENSMUST00000110242ENSMUST00000140309ENSMUST00000145140ENSMUST00000146322ENSMUST00000147072ENSMUSG00000036356ENSMUST00000078350ENSMUST00000125727ENSMUST00000130214ENSMUST00000136060ENSMUST00000139141ENSMUST00000143586ENSMUST00000150083ENSMUSG00000081745ENSMUST00000121595ENSMUSG00000085197ENSMUST00000124929ENSMUST00000139265ENSMUSG00000085487ENSMUST00000152660ENSMUSG00000087489ENSMUST00000132076
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003TM_0001ENSG00000104613ENST00000397977ENST00000520827ENST00000521357ENST00000522081ENST00000522806ENST00000523772ENSG00000147408ENST00000332246ENST00000454498ENST00000519222ENST00000522573ENST00000522854ENSG00000253270ENST00000519803CIL_0003TM_0002ENSMUSG00000031864ENSMUST00000034328ENSMUST00000070713ENSMUST00000110241ENSMUST00000110242ENSMUST00000140309ENSMUST00000146322ENSMUSG00000036356ENSMUST00000078350ENSMUST00000125727ENSMUST00000130214ENSMUST00000136060ENSMUSG00000081745ENSMUST00000121595ENSMUSG00000085197ENSMUST00000124929ENSMUST00000139265ENSMUSG00000085487ENSMUST00000152660ENSMUSG00000087489ENSMUST00000132076
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104613 ENST00000397977 13.010±0.00 20.841±0.00 1.331±0.00 6.941±0.00 9.819±4.80 7.056±4.25 4.739±3.28 10.194±7.00 7.424±4.00 6.979±4.17 8.133±0.00 9.982±4.88 9.953±1.86 9.123±0.45
ENST00000517546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.478±0.00 N/A N/A
ENST00000520985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521357 N/A N/A N/A N/A N/A 9.478±0.00 N/A N/A 11.528±0.00 12.561±0.00 N/A N/A N/A N/A
ENST00000521758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.058±0.00 N/A N/A
ENST00000522114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 47.823±0.00 48.081±0.00 41.483±0.00
ENST00000523143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.221±0.00
ENST00000523846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000147408 ENST00000332246 N/A N/A N/A N/A 1.856±0.00 0.709±0.00 N/A N/A N/A N/A N/A 2.773±0.00 N/A N/A
ENST00000397998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454498 N/A N/A N/A 2.448±0.00 0.604±0.00 N/A N/A N/A N/A N/A N/A 1.504±0.00 N/A N/A
ENST00000517494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519222 N/A N/A 0.411±0.00 N/A N/A N/A N/A N/A N/A 0.649±0.00 0.280±0.00 N/A N/A N/A
ENST00000520003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.528±0.00 N/A N/A N/A
ENST00000522732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522854 N/A N/A N/A 1.666±0.00 1.374±0.00 N/A 1.475±0.00 N/A 2.742±2.18 8.408±0.00 N/A 2.574±1.24 4.567±0.00 1.689±0.00
ENST00000523227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000253270 ENST00000519803 N/A 0.065±0.00 N/A N/A 0.097±0.00 N/A 0.615±0.42 N/A N/A N/A N/A N/A 0.708±0.05 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031864 ENSMUST00000034328 1.698±0.59 2.336±0.91 1.451±0.02 N/A 1.873±0.45 3.286±1.33 1.215±0.00 1.796±0.75 1.265±0.70 1.168±0.19 0.951±0.07 1.630±0.53 1.972±0.86 7.393±1.61
ENSMUST00000070713 N/A N/A N/A 4.205±1.12 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110241 5.086±1.59 1.989±0.11 4.537±0.39 8.250±2.05 3.365±1.03 3.021±0.53 2.362±0.00 1.228±0.25 0.939±0.48 2.720±0.36 2.715±0.80 3.769±0.93 7.233±1.45 18.487±7.10
ENSMUST00000110242 N/A 0.796±0.09 N/A N/A 0.614±0.00 N/A N/A N/A 0.156±0.00 N/A N/A 0.927±0.34 N/A N/A
ENSMUST00000140309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.997±0.00 N/A
ENSMUST00000145140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146322 N/A 4.161±1.26 N/A N/A N/A 3.079±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000036356 ENSMUST00000078350 0.689±0.42 0.173±0.00 0.823±0.10 0.868±0.64 0.546±0.24 0.189±0.00 0.382±0.05 0.325±0.10 0.184±0.09 1.849±0.62 0.345±0.14 0.579±0.20 2.517±1.05 0.199±0.00
ENSMUST00000125727 N/A N/A N/A N/A N/A N/A N/A N/A 0.285±0.00 N/A N/A N/A N/A N/A
ENSMUST00000130214 0.797±0.21 0.198±0.00 N/A 0.051±0.00 0.489±0.26 0.168±0.05 0.582±0.20 0.341±0.07 0.077±0.01 1.872±0.29 0.206±0.06 0.898±0.42 2.028±0.00 N/A
ENSMUST00000136060 0.869±0.25 0.378±0.00 N/A 0.200±0.14 0.622±0.17 0.309±0.09 0.170±0.00 0.522±0.16 0.099±0.04 2.713±0.68 0.242±0.00 1.019±0.46 0.263±0.00 N/A
ENSMUST00000139141 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081745 ENSMUST00000121595 0.284±0.21 0.204±0.11 0.107±0.01 0.379±0.15 0.078±0.01 0.324±0.21 N/A 0.213±0.11 0.065±0.04 0.112±0.05 N/A 0.405±0.37 0.094±0.03 0.200±0.08
ENSMUSG00000085197 ENSMUST00000124929 N/A N/A N/A 0.095±0.06 N/A 0.160±0.00 0.082±0.00 0.201±0.14 0.025±0.00 N/A 0.115±0.01 0.148±0.07 N/A 19.651±3.20
ENSMUST00000139265 N/A N/A N/A N/A N/A N/A N/A 0.133±0.06 0.068±0.07 N/A N/A N/A 0.084±0.00 7.959±1.66
ENSMUSG00000085487 ENSMUST00000152660 N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A 0.070±0.00 0.617±0.27 N/A N/A 0.036±0.00 N/A
ENSMUSG00000087489 ENSMUST00000132076 0.079±0.00 N/A 0.047±0.00 0.298±0.40 N/A N/A 0.077±0.00 N/A 0.016±0.00 0.155±0.04 N/A 0.151±0.00 0.327±0.38 0.089±0.00

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