C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chondroitin sulfate N-acetylgalactosaminyltransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036356 Csgalnact1 10090 - 8:68356781-68735146 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000078350 Csgalnact1-001 68356781-68735146 protein_coding
  ENSMUST00000125727 Csgalnact1-006 68557071-68735115 processed_transcript
  ENSMUST00000130214 Csgalnact1-002 68357967-68735114 protein_coding
  ENSMUST00000136060 Csgalnact1-003 68388643-68735102 protein_coding
  ENSMUST00000139141 Csgalnact1-004 68645799-68735115 processed_transcript
  ENSMUST00000143586 Csgalnact1-005 68461581-68735115 processed_transcript
  ENSMUST00000150083 Csgalnact1-007 68556972-68735114 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078350ENSMUST00000125727ENSMUST00000130214ENSMUST00000136060
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078350 0.689±0.42 0.173±0.00 0.823±0.10 0.868±0.64 0.546±0.24 0.189±0.00 0.382±0.05 0.325±0.10 0.184±0.09 1.849±0.62 0.345±0.14 0.579±0.20 2.517±1.05 0.199±0.00
ENSMUST00000125727 N/A N/A N/A N/A N/A N/A N/A N/A 0.285±0.00 N/A N/A N/A N/A N/A
ENSMUST00000130214 0.797±0.21 0.198±0.00 N/A 0.051±0.00 0.489±0.26 0.168±0.05 0.582±0.20 0.341±0.07 0.077±0.01 1.872±0.29 0.206±0.06 0.898±0.42 2.028±0.00 N/A
ENSMUST00000136060 0.869±0.25 0.378±0.00 N/A 0.200±0.14 0.622±0.17 0.309±0.09 0.170±0.00 0.522±0.16 0.099±0.04 2.713±0.68 0.242±0.00 1.019±0.46 0.263±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IX CIL_0003IX_0002 CGP 8:68276567-68735146
CIL_0003TM CIL_0003TM_0002 CGP 8:68356781-68829410

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001958 IMP endochondral ossification
GO:0008376 ISS acetylgalactosaminyltransferase activity
GO:0008955 ISS peptidoglycan glycosyltransferase activity
GO:0015020 ISS glucuronosyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0019276 ISS UDP-N-acetylgalactosamine metabolic process
GO:0030198 IMP extracellular matrix organization
GO:0030204 IMP chondroitin sulfate metabolic process
GO:0030206 ISS chondroitin sulfate biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0046398 ISS UDP-glucuronate metabolic process
GO:0046872 IEA metal ion binding
GO:0047237 ISS glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0047238 ISS glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050653 ISS chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process
GO:0051216 IMP cartilage development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040535 CSGALNACT1 (1 of 2) chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein_coding Danio_rerio
ENSDARG00000089233 CSGALNACT1 (2 of 2) chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein_coding Danio_rerio
ENSG00000147408 CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein_coding Homo_sapiens

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