C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136228 Pax8-004 ENSMUSG00000026976 10090 - 2:24429527-24475574 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000196 CIL_000196_0002 CGP 2:24367580-24475599

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001656 IGI metanephros development
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005667 TAS transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0009887 TAS organ morphogenesis
GO:0030154 IMP cell differentiation
GO:0030878 IGI thyroid gland development
GO:0045944 ISO positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000029014 pax8-201 protein_coding Danio_rerio 0 316
ENST00000263334 PAX8-201 protein_coding Homo_sapiens 0 1568
ENST00000263335 PAX8-002 protein_coding Homo_sapiens 0 1070
ENST00000348715 PAX8-004 protein_coding Homo_sapiens 0 1208
ENST00000355243 PAX2-001 protein_coding Homo_sapiens 0 318
ENST00000361791 PAX2-006 protein_coding Homo_sapiens 0 318
ENST00000370296 PAX2-002 protein_coding Homo_sapiens 0 318
ENST00000397647 PAX8-003 protein_coding Homo_sapiens 0 1068
ENST00000427256 PAX2-003 protein_coding Homo_sapiens 0 318
ENST00000428433 PAX2-201 protein_coding Homo_sapiens 0 318
ENST00000429538 PAX8-001 protein_coding Homo_sapiens 0 1618
ENST00000465084 PAX8-009 protein_coding Homo_sapiens 0 254
ENST00000467778 PAX8-007 retained_intron Homo_sapiens 0 1077
ENST00000468980 PAX8-006 protein_coding Homo_sapiens 0 309
ENST00000485840 PAX8-005 retained_intron Homo_sapiens 0 545
ENST00000497038 PAX8-008 nonsense_mediated_decay Homo_sapiens 0 760
ENST00000554172 PAX2-005 protein_coding Homo_sapiens 0 318
ENST00000554352 PAX8-013 retained_intron Homo_sapiens 0 381
ENST00000554830 PAX8-012 protein_coding Homo_sapiens 0 488

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