C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361791 PAX2-006 ENSG00000075891 9606 + 10:100746220-100829589 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainKidneyLungOvaryPlacentaTestisENST00000361791
Transcript ID Adrenal Brain Kidney Lung Ovary Placenta Testis
ENST00000361791 0.019±0.00 0.129±0.00 11.684±0.00 0.060±0.00 0.838±1.09 0.087±0.00 1.738±1.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QB CIL_0007QB_0001 VISTA 10:100185085-100786577
CIL_00082U CIL_00082U_0001 VISTA 10:100312457-100914449
CIL_00082V CIL_00082V_0001 VISTA 10:100315129-100915721
CIL_00093R CIL_00093R_0001 VISTA 10:100355158-100955821
CIL_00093O CIL_00093O_0001 VISTA 10:100359362-100959974
CIL_0008BC CIL_0008BC_0001 VISTA 10:100387324-100989228
CIL_0008BD CIL_0008BD_0001 VISTA 10:100486833-101088338
CIL_0007U1 CIL_0007U1_0001 VISTA 10:100491715-101092615
CIL_0005DR CIL_0005DR_0001 CGP 10:100529072-100829941
CIL_0007KC CIL_0007KC_0001 UCNEbase 10:100612932-100859321
CIL_0003MX CIL_0003MX_0001 CGP 10:100735603-100965136

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174490 Pax2-001 protein_coding Mus_musculus 0 2121
ENSMUST00000173346 Pax2-004 protein_coding Mus_musculus 0 1201
ENSMUST00000004340 Pax2-201 protein_coding Mus_musculus 0 1109
ENSDART00000076998 pax2a-001 protein_coding Danio_rerio 0 905
ENSDART00000144443 pax2a-007 protein_coding Danio_rerio 0 802
ENSDART00000076992 pax2a-201 protein_coding Danio_rerio 0 418
ENSDART00000134330 pax2a-005 protein_coding Danio_rerio 0 388
ENSDART00000139782 pax2a-004 protein_coding Danio_rerio 0 388
ENSMUST00000153601 Pax8-005 protein_coding Mus_musculus 0 333
ENSMUST00000149294 Pax8-003 protein_coding Mus_musculus 0 333
ENSMUST00000028355 Pax8-001 protein_coding Mus_musculus 0 333
ENSMUST00000153535 Pax8-008 protein_coding Mus_musculus 0 318
ENSMUST00000136228 Pax8-004 protein_coding Mus_musculus 0 318
ENSDART00000132004 pax2a-010 protein_coding Danio_rerio 0 274
ENSDART00000134424 pax2a-009 protein_coding Danio_rerio 0 246

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