C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stimulated by retinoic acid gene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136338 Stra6-005 ENSMUSG00000032327 10090 + 9:58131897-58140444 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0002 VISTA 9:57506610-58107834
CIL_00029J CIL_00029J_0002 CGP 9:58006411-58118823
CIL_00045Q CIL_00045Q_0002 CGP 9:58028677-58153996
CIL_00045T CIL_00045T_0002 CGP 9:58063788-58159221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0034633 IGI retinol transport
GO:0046427 IMP positive regulation of JAK-STAT cascade
GO:0051183 IEA vitamin transporter activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323940 STRA6-002 protein_coding Homo_sapiens 1e-31 143
ENST00000395105 STRA6-001 protein_coding Homo_sapiens 1e-31 143
ENST00000416286 STRA6-009 protein_coding Homo_sapiens 1e-31 143
ENST00000432245 STRA6-003 protein_coding Homo_sapiens 7e-32 143
ENST00000449139 STRA6-010 protein_coding Homo_sapiens 1e-31 143
ENST00000535552 STRA6-008 protein_coding Homo_sapiens 1e-31 143
ENST00000563965 STRA6-005 protein_coding Homo_sapiens 1e-31 143
ENST00000569936 STRA6-004 nonsense_mediated_decay Homo_sapiens 8e-32 143
ENST00000573214 STRA6-020 retained_intron Homo_sapiens 2e-32 143
ENST00000574278 STRA6-011 protein_coding Homo_sapiens 9e-32 143
ENST00000574439 STRA6-012 processed_transcript Homo_sapiens 4e-21 108
ENST00000616000 STRA6-201 protein_coding Homo_sapiens 1e-31 143

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