C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA splicing endonuclease 54 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136343 Tsen54-005 ENSMUSG00000020781 10090 + 11:115815698-115821699 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryPlacentaTestisENSMUST00000136343
Transcript ID Brain Muscle Ovary Placenta Testis
ENSMUST00000136343 2.505±0.00 1.097±0.34 17.274±0.00 16.051±1.66 1.304±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_0007IY CIL_0007IY_0002 CGP 11:115799183-115823094
CIL_0007IP CIL_0007IP_0002 CGP 11:115814724-115855780

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000333213 TSEN54-001 protein_coding Homo_sapiens 7e-37 159
ENST00000434205 TSEN54-005 protein_coding Homo_sapiens 1e-35 154
ENST00000578415 TSEN54-008 nonsense_mediated_decay Homo_sapiens 4e-37 159
ENST00000583173 TSEN54-007 nonsense_mediated_decay Homo_sapiens 3e-37 159
ENST00000583818 TSEN54-011 nonsense_mediated_decay Homo_sapiens 1e-35 154

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