C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH2B adaptor protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136960 Sh2b3-003 ENSMUSG00000042594 10090 - 5:121815488-121836825 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000136960
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000136960 6.249±1.47 10.065±1.52 7.788±0.74 9.942±4.16 5.463±3.00 4.108±1.10 4.109±0.32 3.771±1.14 11.876±1.37 3.295±0.78 6.141±1.04 4.869±1.55 10.262±1.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TJ CIL_0008TJ_0002 VISTA 5:121625608-122227679
CIL_000903 CIL_000903_0002 VISTA 5:121732502-122333355
CIL_0008YU CIL_0008YU_0002 VISTA 5:121792218-122394768
CIL_0005LG CIL_0005LG_0002 CGP 5:121815488-121854599

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0030097 IMP hemopoiesis
GO:0030154 IMP cell differentiation
GO:0035162 IDA embryonic hemopoiesis
GO:0035556 IDA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341259 SH2B3-001 protein_coding Homo_sapiens 0 514
ENST00000538307 SH2B3-002 protein_coding Homo_sapiens 0 514

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