C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 31
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137296 Rnf31-002 ENSMUSG00000047098 10090 + 14:55591744-55597656 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031B CIL_00031B_0002 CGP 14:55587441-55603693
CIL_00023F CIL_00023F_0002 CGP 14:55591708-55610030

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005829 IDA cytosol
GO:0008270 IEA zinc ion binding
GO:0009898 IDA cytoplasmic side of plasma membrane
GO:0016567 IEA protein ubiquitination
GO:0060546 IGI negative regulation of necroptotic process
GO:0071797 IEA LUBAC complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324103 RNF31-001 protein_coding Homo_sapiens 0 1417
ENST00000377861 PCDH9-002 protein_coding Homo_sapiens 0.000000001 73
ENST00000491351 RNF31-002 nonsense_mediated_decay Homo_sapiens 0 294
ENST00000557878 RNF31-009 processed_transcript Homo_sapiens 0 459
ENST00000557991 RNF31-011 protein_coding Homo_sapiens 0 588
ENST00000558468 IRF9-001 nonsense_mediated_decay Homo_sapiens 0 632
ENST00000558634 RNF31-008 processed_transcript Homo_sapiens 0 477
ENST00000558907 RNF31-018 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000559071 RNF31-006 retained_intron Homo_sapiens 0 713
ENST00000559260 RNF31-015 protein_coding Homo_sapiens 0 477
ENST00000559275 RNF31-004 protein_coding Homo_sapiens 0 822
ENST00000559308 RNF31-026 protein_coding Homo_sapiens 0 547
ENST00000559438 RNF31-013 processed_transcript Homo_sapiens 0 459
ENST00000559533 RNF31-010 protein_coding Homo_sapiens 0 743
ENST00000559583 RNF31-017 processed_transcript Homo_sapiens 0 403
ENST00000559882 RNF31-025 processed_transcript Homo_sapiens 0 368
ENST00000560071 RNF31-014 protein_coding Homo_sapiens 0 560
ENST00000560342 RNF31-016 retained_intron Homo_sapiens 0 675
ENST00000560787 RNF31-005 protein_coding Homo_sapiens 0 1048
ENST00000560875 RNF31-007 protein_coding Homo_sapiens 0 219

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