C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377861 PCDH9-002 ENSG00000184226 9606 - 13:67201015-67230445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377861
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377861 0.155±0.00 0.118±0.00 1.048±0.00 7.676±5.62 0.585±0.10 0.323±0.07 1.364±0.16 0.490±0.11 0.730±0.68 1.059±1.02 0.075±0.00 0.041±0.03 0.004±0.00 0.139±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HT CIL_0008HT_0001 VISTA 13:65735667-66336616

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068992 Pcdh9-201 protein_coding Mus_musculus 0 4335
ENSMUST00000137296 Rnf31-002 nonsense_mediated_decay Mus_musculus 0.000000001 73
ENSMUST00000127055 Cald1-008 retained_intron Mus_musculus 0.0005 55

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