C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137404 Ndst3-002 ENSMUSG00000027977 10090 - 3:123526166-123690852 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverOvaryPlacentaENSMUST00000137404
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Ovary Placenta
ENSMUST00000137404 0.218±0.18 0.084±0.03 3.039±0.09 0.254±0.00 0.106±0.06 0.013±0.00 0.102±0.03 0.023±0.01 0.337±0.00 0.038±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003I1 CIL_0003I1_0002 CGP 3:123446913-123690852

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IEA Golgi apparatus
GO:0008146 IDA sulfotransferase activity
GO:0015012 IEA heparan sulfate proteoglycan biosynthetic process
GO:0015016 IEA [heparan sulfate]-glucosamine N-sulfotransferase activity
GO:0016021 IEA integral component of membrane
GO:0019213 IDA deacetylase activity
GO:0030210 IEA heparin biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264363 NDST4-001 protein_coding Homo_sapiens 0 1026
ENST00000296499 NDST3-001 protein_coding Homo_sapiens 0 2388
ENST00000394488 NDST3-003 retained_intron Homo_sapiens 0 1149
ENST00000504854 NDST4-003 nonsense_mediated_decay Homo_sapiens 0 638
ENST00000514570 NDST4-002 retained_intron Homo_sapiens 0 254
ENST00000613194 NDST4-201 protein_coding Homo_sapiens 0 1026

Loading