C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000504854 NDST4-003 ENSG00000138653 9606 - 4:114827786-115113777 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryTestisENST00000504854
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Testis
ENST00000504854 0.030±0.00 0.025±0.00 0.031±0.00 0.017±0.00 0.006±0.00 0.036±0.00 0.071±0.00 0.038±0.03 0.101±0.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IEA Golgi apparatus
GO:0008146 IEA sulfotransferase activity
GO:0015012 IEA heparan sulfate proteoglycan biosynthetic process
GO:0015016 IEA [heparan sulfate]-glucosamine N-sulfotransferase activity
GO:0016021 IEA integral component of membrane
GO:0016787 IEA hydrolase activity
GO:0030210 IEA heparin biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173932 Ndst4-001 protein_coding Mus_musculus 0 1304
ENSMUST00000147016 Ndst4-002 retained_intron Mus_musculus 0 850
ENSMUST00000029602 Ndst3-201 protein_coding Mus_musculus 0 806
ENSMUST00000154668 Ndst3-001 protein_coding Mus_musculus 0 806
ENSMUST00000174648 Ndst4-005 protein_coding Mus_musculus 0 688
ENSMUST00000132112 Ndst3-004 protein_coding Mus_musculus 0 638
ENSMUST00000124803 Ndst3-005 protein_coding Mus_musculus 0 638
ENSMUST00000137404 Ndst3-002 nonsense_mediated_decay Mus_musculus 0 638
ENSMUST00000144344 Ndst4-003 protein_coding Mus_musculus 0 617
ENSMUST00000172537 Ndst3-003 protein_coding Mus_musculus 0 470
ENSMUST00000172632 Ndst4-004 processed_transcript Mus_musculus 0 233
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000008 60

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