C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 34
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137823 Usp34-001 ENSMUSG00000056342 10090 + 11:23306916-23489744 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000137823
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000137823 3.260±0.87 3.032±0.69 4.951±2.03 8.854±3.46 3.470±1.56 3.947±0.52 1.929±0.00 3.473±1.05 2.908±1.37 4.389±1.32 2.594±0.36 6.213±2.29 10.322±1.43 11.833±1.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N6 CIL_0007N6_0002 UCNEbase 11:23268537-23489768

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005575 ND cellular_component
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016055 IEA Wnt signaling pathway
GO:0071108 ISS protein K48-linked deubiquitination
GO:0090263 ISS positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000394457 AHSA2-001 protein_coding Homo_sapiens 0 1483
ENST00000398571 USP34-001 protein_coding Homo_sapiens 0 12670
ENST00000411912 USP34-002 protein_coding Homo_sapiens 0 3868
ENST00000436269 USP34-005 protein_coding Homo_sapiens 0 2370
ENST00000453133 USP34-008 nonsense_mediated_decay Homo_sapiens 0 1783
ENST00000453734 USP34-006 protein_coding Homo_sapiens 0 3225
ENST00000460004 USP34-010 processed_transcript Homo_sapiens 0 494
ENST00000463046 USP34-003 retained_intron Homo_sapiens 0 1663
ENST00000467128 USP34-022 processed_transcript Homo_sapiens 0 713
ENST00000468703 USP34-026 retained_intron Homo_sapiens 0 219
ENST00000472689 USP34-009 processed_transcript Homo_sapiens 0 676
ENST00000472706 USP34-012 processed_transcript Homo_sapiens 0 558
ENST00000476716 USP34-021 processed_transcript Homo_sapiens 0 778
ENST00000482250 USP34-018 retained_intron Homo_sapiens 0 315
ENST00000483672 USP34-019 retained_intron Homo_sapiens 0 375
ENST00000484179 USP34-014 retained_intron Homo_sapiens 0 651
ENST00000487547 USP34-016 retained_intron Homo_sapiens 0 383
ENST00000490527 USP34-017 retained_intron Homo_sapiens 0 508
ENST00000490552 USP34-004 retained_intron Homo_sapiens 0 388
ENST00000492604 USP34-025 processed_transcript Homo_sapiens 0 268
ENST00000492882 USP34-015 retained_intron Homo_sapiens 0 302
ENST00000494867 USP34-013 retained_intron Homo_sapiens 0 398
ENST00000498268 USP34-024 retained_intron Homo_sapiens 4.06377e-44 182
ENST00000611867 RP11-326L9.2-001 unprocessed_pseudogene Homo_sapiens 0 289

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