| Source ID |
Type |
Tax ID |
Position |
| XPO1 |
UCNEbase |
7955 |
17:23799197-23815515  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007N6_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007N6_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007N6_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000082898' => 'exportin 1',
'ENSG00000115464' => 'ubiquitin specific peptidase 34',
'ENSG00000173209' => 'AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)',
'ENSG00000206937' => 'small nucleolar RNA, H/ACA box 70B',
'ENSG00000234624' => null,
'ENSG00000270820' => null,
'ENSG00000271146' => null,
'ENSG00000273302' => null,
'ENSMUSG00000020288' => 'AHA1, activator of heat shock protein ATPase 2',
'ENSMUSG00000020290' => 'exportin 1, CRM1 homolog (yeast)',
'ENSMUSG00000056342' => 'ubiquitin specific peptidase 34',
'ENSMUSG00000065591' => 'predicted gene, 22753'
),
'gene_name_arr' => array(
'ENSG00000082898' => 'XPO1',
'ENSG00000115464' => 'USP34',
'ENSG00000173209' => 'AHSA2',
'ENSG00000206937' => 'SNORA70B',
'ENSG00000234624' => 'AC016894.1',
'ENSG00000270820' => 'RP11-355B11.2',
'ENSG00000271146' => 'RP11-479F13.1',
'ENSG00000273302' => 'RP11-493E12.2',
'ENSMUSG00000020288' => 'Ahsa2',
'ENSMUSG00000020290' => 'Xpo1',
'ENSMUSG00000056342' => 'Usp34',
'ENSMUSG00000065591' => 'Gm22753'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 38 => 'Brain',
(int) 53 => 'Breast',
(int) 70 => 'Colon',
(int) 79 => 'Heart',
(int) 89 => 'Kidney',
(int) 104 => 'Liver',
(int) 120 => 'Lung',
(int) 135 => 'Muscle',
(int) 147 => 'Ovary',
(int) 169 => 'Placenta',
(int) 190 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 90,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000401558' => array(
'start' => '61477849',
'end' => '61538283',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-001'
),
'ENST00000404992' => array(
'start' => '61478338',
'end' => '61537110',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-006'
),
'ENST00000406957' => array(
'start' => '61478700',
'end' => '61538248',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-004'
),
'ENST00000420673' => array(
'start' => '61522611',
'end' => '61534278',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-019'
),
'ENST00000422552' => array(
'start' => '61522626',
'end' => '61534512',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-018'
),
'ENST00000428210' => array(
'start' => '61477934',
'end' => '61538231',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'XPO1-005'
),
'ENST00000436018' => array(
'start' => '61526471',
'end' => '61538626',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-009'
),
'ENST00000437159' => array(
'start' => '61496994',
'end' => '61526518',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'XPO1-024'
),
'ENST00000443240' => array(
'start' => '61502006',
'end' => '61538626',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-008'
),
'ENST00000449444' => array(
'start' => '61526462',
'end' => '61536588',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-016'
),
'ENST00000451765' => array(
'start' => '61499765',
'end' => '61537117',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-015'
),
'ENST00000457483' => array(
'start' => '61522630',
'end' => '61537640',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-017'
),
'ENST00000460037' => array(
'start' => '61493638',
'end' => '61495573',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-027'
),
'ENST00000461407' => array(
'start' => '61482625',
'end' => '61488663',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-007'
),
'ENST00000468259' => array(
'start' => '61502290',
'end' => '61525775',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-022'
),
'ENST00000469337' => array(
'start' => '61492342',
'end' => '61492994',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-028'
),
'ENST00000475744' => array(
'start' => '61496961',
'end' => '61498874',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-026'
),
'ENST00000476585' => array(
'start' => '61502146',
'end' => '61526523',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-023'
),
'ENST00000481073' => array(
'start' => '61477935',
'end' => '61494743',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-014'
),
'ENST00000481214' => array(
'start' => '61526067',
'end' => '61537694',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-020'
),
'ENST00000489954' => array(
'start' => '61499717',
'end' => '61502608',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-025'
),
'ENST00000492182' => array(
'start' => '61482625',
'end' => '61485958',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-030'
),
'ENST00000494468' => array(
'start' => '61485584',
'end' => '61488663',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-029'
),
'ENST00000495003' => array(
'start' => '61526151',
'end' => '61533968',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-021'
),
'ENST00000398571' => array(
'start' => '61187463',
'end' => '61470769',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP34-001'
),
'ENST00000411912' => array(
'start' => '61187463',
'end' => '61241614',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP34-002'
),
'ENST00000436269' => array(
'start' => '61187550',
'end' => '61204330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP34-005'
),
'ENST00000453133' => array(
'start' => '61348272',
'end' => '61470690',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'USP34-008'
),
'ENST00000453734' => array(
'start' => '61226788',
'end' => '61280333',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP34-006'
),
'ENST00000460004' => array(
'start' => '61339575',
'end' => '61348028',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-010'
),
'ENST00000463046' => array(
'start' => '61189277',
'end' => '61256886',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-003'
),
'ENST00000467128' => array(
'start' => '61206788',
'end' => '61214663',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-022'
),
'ENST00000468703' => array(
'start' => '61222632',
'end' => '61223255',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-026'
),
'ENST00000472689' => array(
'start' => '61208899',
'end' => '61222685',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-009'
),
'ENST00000472706' => array(
'start' => '61214600',
'end' => '61301032',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-012'
),
'ENST00000476716' => array(
'start' => '61204527',
'end' => '61220368',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-021'
),
'ENST00000482250' => array(
'start' => '61220405',
'end' => '61222975',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-018'
),
'ENST00000483672' => array(
'start' => '61220193',
'end' => '61221601',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-019'
),
'ENST00000484179' => array(
'start' => '61265585',
'end' => '61281151',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-014'
),
'ENST00000487547' => array(
'start' => '61221559',
'end' => '61223661',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-016'
),
'ENST00000490527' => array(
'start' => '61214627',
'end' => '61221845',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-017'
),
'ENST00000490552' => array(
'start' => '61189454',
'end' => '61191349',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-004'
),
'ENST00000492604' => array(
'start' => '61188474',
'end' => '61189796',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-025'
),
'ENST00000492882' => array(
'start' => '61265266',
'end' => '61266039',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-015'
),
'ENST00000494867' => array(
'start' => '61277702',
'end' => '61281139',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-013'
),
'ENST00000498268' => array(
'start' => '61190627',
'end' => '61193365',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-024'
),
'ENST00000357022' => array(
'start' => '61177418',
'end' => '61187551',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AHSA2-002'
),
'ENST00000394457' => array(
'start' => '61177529',
'end' => '61191203',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AHSA2-001'
),
'ENST00000410073' => array(
'start' => '61184712',
'end' => '61186810',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AHSA2-009'
),
'ENST00000463681' => array(
'start' => '61177428',
'end' => '61181325',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-007'
),
'ENST00000471542' => array(
'start' => '61178668',
'end' => '61186912',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AHSA2-004'
),
'ENST00000484217' => array(
'start' => '61183558',
'end' => '61186807',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AHSA2-012'
),
'ENST00000487904' => array(
'start' => '61181351',
'end' => '61185746',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AHSA2-008'
),
'ENST00000489653' => array(
'start' => '61177472',
'end' => '61186913',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-003'
),
'ENST00000491217' => array(
'start' => '61185526',
'end' => '61186775',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-011'
),
'ENST00000493310' => array(
'start' => '61179131',
'end' => '61181680',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-010'
),
'ENST00000493628' => array(
'start' => '61181338',
'end' => '61186807',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-006'
),
'ENST00000384210' => array(
'start' => '61417244',
'end' => '61417378',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA70B-201'
),
'ENST00000444364' => array(
'start' => '61416887',
'end' => '61417197',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC016894.1-001'
),
'ENST00000578974' => array(
'start' => '61471455',
'end' => '61484130',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-003'
),
'ENST00000603028' => array(
'start' => '61471356',
'end' => '61482926',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-004'
),
'ENST00000603199' => array(
'start' => '61471380',
'end' => '61480410',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-002'
),
'ENST00000603652' => array(
'start' => '61471188',
'end' => '61482720',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-001'
),
'ENST00000605437' => array(
'start' => '61483373',
'end' => '61483941',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-005'
),
'ENST00000605372' => array(
'start' => '61249780',
'end' => '61250621',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-479F13.1-001'
),
'ENST00000609422' => array(
'start' => '61199979',
'end' => '61200769',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-493E12.2-001'
),
'ENSMUST00000020529' => array(
'start' => '23488547',
'end' => '23498030',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-002'
),
'ENSMUST00000109539' => array(
'start' => '23487882',
'end' => '23497930',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-003'
),
'ENSMUST00000122864' => array(
'start' => '23490321',
'end' => '23491424',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ahsa2-007'
),
'ENSMUST00000124801' => array(
'start' => '23489583',
'end' => '23492306',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ahsa2-008'
),
'ENSMUST00000128372' => array(
'start' => '23488549',
'end' => '23497538',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-004'
),
'ENSMUST00000128559' => array(
'start' => '23493154',
'end' => '23497895',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-005'
),
'ENSMUST00000147157' => array(
'start' => '23491109',
'end' => '23497905',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-006'
),
'ENSMUST00000153409' => array(
'start' => '23490427',
'end' => '23491077',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ahsa2-001'
),
'ENSMUST00000020538' => array(
'start' => '23256041',
'end' => '23297597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-201'
),
'ENSMUST00000102869' => array(
'start' => '23256078',
'end' => '23298249',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-001'
),
'ENSMUST00000102870' => array(
'start' => '23256055',
'end' => '23296233',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-002'
),
'ENSMUST00000109551' => array(
'start' => '23256041',
'end' => '23297597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-202'
),
'ENSMUST00000136235' => array(
'start' => '23256589',
'end' => '23267714',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-005'
),
'ENSMUST00000149371' => array(
'start' => '23256058',
'end' => '23282726',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Xpo1-003'
),
'ENSMUST00000150750' => array(
'start' => '23284644',
'end' => '23287451',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-004'
),
'ENSMUST00000125701' => array(
'start' => '23486805',
'end' => '23487323',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp34-002'
),
'ENSMUST00000129368' => array(
'start' => '23470289',
'end' => '23488368',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp34-003'
),
'ENSMUST00000129521' => array(
'start' => '23457938',
'end' => '23460897',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp34-005'
),
'ENSMUST00000130131' => array(
'start' => '23420055',
'end' => '23456686',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp34-006'
),
'ENSMUST00000137823' => array(
'start' => '23306916',
'end' => '23489744',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp34-001'
),
'ENSMUST00000148927' => array(
'start' => '23458077',
'end' => '23460610',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp34-004'
),
'ENSMUST00000155984' => array(
'start' => '23414976',
'end' => '23420652',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp34-007'
),
'ENSMUST00000180046' => array(
'start' => '23306895',
'end' => '23490560',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp34-201'
),
'ENSMUST00000083657' => array(
'start' => '23479561',
'end' => '23479667',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm22753-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007N6_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007N6_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007N6_0001' => array(
'genes_in_region' => array(
'ENSG00000082898' => array(
[maximum depth reached]
),
'ENSG00000115464' => array(
[maximum depth reached]
),
'ENSG00000206937' => array(
[maximum depth reached]
),
'ENSG00000234624' => array(
[maximum depth reached]
),
'ENSG00000271146' => array(
[maximum depth reached]
),
'ENSG00000273302' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Ovary',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Bladder',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Adrenal',
(int) 33 => 'Bladder',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Adrenal',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis',
(int) 64 => 'Adrenal',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Kidney',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Placenta',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Bladder',
(int) 78 => 'Ovary',
(int) 79 => 'Placenta',
(int) 80 => 'Testis',
(int) 81 => 'Adrenal',
(int) 82 => 'Breast',
(int) 83 => 'Kidney',
(int) 84 => 'Testis',
(int) 85 => 'Adipose',
(int) 86 => 'Adrenal',
(int) 87 => 'Brain',
(int) 88 => 'Breast',
(int) 89 => 'Kidney',
(int) 90 => 'Liver',
(int) 91 => 'Lung',
(int) 92 => 'Ovary',
(int) 93 => 'Placenta',
(int) 94 => 'Adrenal',
(int) 95 => 'Breast',
(int) 96 => 'Heart',
(int) 97 => 'Liver',
(int) 98 => 'Lung',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis'
)
),
'CIL_0007N6_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000020288' => array(
[maximum depth reached]
),
'ENSMUSG00000020290' => array(
[maximum depth reached]
),
'ENSMUSG00000065591' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Brain',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Bladder',
(int) 19 => 'Breast',
(int) 20 => 'Kidney',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Adipose',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Breast',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Muscle',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Adipose',
(int) 47 => 'Bladder',
(int) 48 => 'Brain',
(int) 49 => 'Breast',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Liver',
(int) 53 => 'Lung',
(int) 54 => 'Muscle',
(int) 55 => 'Ovary',
(int) 56 => 'Placenta',
(int) 57 => 'Testis',
(int) 58 => 'Bladder',
(int) 59 => 'Liver',
(int) 60 => 'Placenta',
(int) 61 => 'Adrenal',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Kidney',
(int) 65 => 'Liver',
(int) 66 => 'Lung',
(int) 67 => 'Ovary',
(int) 68 => 'Brain',
(int) 69 => 'Placenta',
(int) 70 => 'Adipose',
(int) 71 => 'Adrenal',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Muscle',
(int) 81 => 'Ovary',
(int) 82 => 'Placenta',
(int) 83 => 'Testis',
(int) 84 => 'Adipose',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Ovary',
(int) 88 => 'Placenta',
(int) 89 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000082898' => 'exportin 1',
'ENSG00000115464' => 'ubiquitin specific peptidase 34',
'ENSG00000173209' => 'AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)',
'ENSG00000206937' => 'small nucleolar RNA, H/ACA box 70B',
'ENSG00000234624' => null,
'ENSG00000270820' => null,
'ENSG00000271146' => null,
'ENSG00000273302' => null,
'ENSMUSG00000020288' => 'AHA1, activator of heat shock protein ATPase 2',
'ENSMUSG00000020290' => 'exportin 1, CRM1 homolog (yeast)',
'ENSMUSG00000056342' => 'ubiquitin specific peptidase 34',
'ENSMUSG00000065591' => 'predicted gene, 22753'
)
$gene_name_arr = array(
'ENSG00000082898' => 'XPO1',
'ENSG00000115464' => 'USP34',
'ENSG00000173209' => 'AHSA2',
'ENSG00000206937' => 'SNORA70B',
'ENSG00000234624' => 'AC016894.1',
'ENSG00000270820' => 'RP11-355B11.2',
'ENSG00000271146' => 'RP11-479F13.1',
'ENSG00000273302' => 'RP11-493E12.2',
'ENSMUSG00000020288' => 'Ahsa2',
'ENSMUSG00000020290' => 'Xpo1',
'ENSMUSG00000056342' => 'Usp34',
'ENSMUSG00000065591' => 'Gm22753'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N6_0001',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '61187520',
'seq_end' => '61525646',
'region_length' => '338126',
'region_type' => 'UCNEbase',
'el_id' => 'XPO1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N6_0002',
'tax_id' => '10090',
'chromosome' => '11',
'seq_start' => '23268537',
'seq_end' => '23489768',
'region_length' => '221231',
'region_type' => 'UCNEbase',
'el_id' => 'XPO1'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N6_0003',
'tax_id' => '7955',
'chromosome' => '17',
'seq_start' => '23799197',
'seq_end' => '23815515',
'region_length' => '16318',
'region_type' => 'UCNEbase',
'el_id' => 'XPO1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 38 => 'Brain',
(int) 53 => 'Breast',
(int) 70 => 'Colon',
(int) 79 => 'Heart',
(int) 89 => 'Kidney',
(int) 104 => 'Liver',
(int) 120 => 'Lung',
(int) 135 => 'Muscle',
(int) 147 => 'Ovary',
(int) 169 => 'Placenta',
(int) 190 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 90
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000401558' => array(
'start' => '61477849',
'end' => '61538283',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-001'
),
'ENST00000404992' => array(
'start' => '61478338',
'end' => '61537110',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-006'
),
'ENST00000406957' => array(
'start' => '61478700',
'end' => '61538248',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-004'
),
'ENST00000420673' => array(
'start' => '61522611',
'end' => '61534278',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-019'
),
'ENST00000422552' => array(
'start' => '61522626',
'end' => '61534512',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-018'
),
'ENST00000428210' => array(
'start' => '61477934',
'end' => '61538231',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'XPO1-005'
),
'ENST00000436018' => array(
'start' => '61526471',
'end' => '61538626',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-009'
),
'ENST00000437159' => array(
'start' => '61496994',
'end' => '61526518',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'XPO1-024'
),
'ENST00000443240' => array(
'start' => '61502006',
'end' => '61538626',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-008'
),
'ENST00000449444' => array(
'start' => '61526462',
'end' => '61536588',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-016'
),
'ENST00000451765' => array(
'start' => '61499765',
'end' => '61537117',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-015'
),
'ENST00000457483' => array(
'start' => '61522630',
'end' => '61537640',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-017'
),
'ENST00000460037' => array(
'start' => '61493638',
'end' => '61495573',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-027'
),
'ENST00000461407' => array(
'start' => '61482625',
'end' => '61488663',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-007'
),
'ENST00000468259' => array(
'start' => '61502290',
'end' => '61525775',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-022'
),
'ENST00000469337' => array(
'start' => '61492342',
'end' => '61492994',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-028'
),
'ENST00000475744' => array(
'start' => '61496961',
'end' => '61498874',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-026'
),
'ENST00000476585' => array(
'start' => '61502146',
'end' => '61526523',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-023'
),
'ENST00000481073' => array(
'start' => '61477935',
'end' => '61494743',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-014'
),
'ENST00000481214' => array(
'start' => '61526067',
'end' => '61537694',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-020'
),
'ENST00000489954' => array(
'start' => '61499717',
'end' => '61502608',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-025'
),
'ENST00000492182' => array(
'start' => '61482625',
'end' => '61485958',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-030'
),
'ENST00000494468' => array(
'start' => '61485584',
'end' => '61488663',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-029'
),
'ENST00000495003' => array(
'start' => '61526151',
'end' => '61533968',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-021'
),
'ENST00000398571' => array(
'start' => '61187463',
'end' => '61470769',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP34-001'
),
'ENST00000411912' => array(
'start' => '61187463',
'end' => '61241614',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP34-002'
),
'ENST00000436269' => array(
'start' => '61187550',
'end' => '61204330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP34-005'
),
'ENST00000453133' => array(
'start' => '61348272',
'end' => '61470690',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'USP34-008'
),
'ENST00000453734' => array(
'start' => '61226788',
'end' => '61280333',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP34-006'
),
'ENST00000460004' => array(
'start' => '61339575',
'end' => '61348028',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-010'
),
'ENST00000463046' => array(
'start' => '61189277',
'end' => '61256886',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-003'
),
'ENST00000467128' => array(
'start' => '61206788',
'end' => '61214663',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-022'
),
'ENST00000468703' => array(
'start' => '61222632',
'end' => '61223255',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-026'
),
'ENST00000472689' => array(
'start' => '61208899',
'end' => '61222685',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-009'
),
'ENST00000472706' => array(
'start' => '61214600',
'end' => '61301032',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-012'
),
'ENST00000476716' => array(
'start' => '61204527',
'end' => '61220368',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-021'
),
'ENST00000482250' => array(
'start' => '61220405',
'end' => '61222975',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-018'
),
'ENST00000483672' => array(
'start' => '61220193',
'end' => '61221601',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-019'
),
'ENST00000484179' => array(
'start' => '61265585',
'end' => '61281151',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-014'
),
'ENST00000487547' => array(
'start' => '61221559',
'end' => '61223661',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-016'
),
'ENST00000490527' => array(
'start' => '61214627',
'end' => '61221845',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-017'
),
'ENST00000490552' => array(
'start' => '61189454',
'end' => '61191349',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-004'
),
'ENST00000492604' => array(
'start' => '61188474',
'end' => '61189796',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-025'
),
'ENST00000492882' => array(
'start' => '61265266',
'end' => '61266039',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-015'
),
'ENST00000494867' => array(
'start' => '61277702',
'end' => '61281139',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-013'
),
'ENST00000498268' => array(
'start' => '61190627',
'end' => '61193365',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-024'
),
'ENST00000357022' => array(
'start' => '61177418',
'end' => '61187551',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AHSA2-002'
),
'ENST00000394457' => array(
'start' => '61177529',
'end' => '61191203',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AHSA2-001'
),
'ENST00000410073' => array(
'start' => '61184712',
'end' => '61186810',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AHSA2-009'
),
'ENST00000463681' => array(
'start' => '61177428',
'end' => '61181325',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-007'
),
'ENST00000471542' => array(
'start' => '61178668',
'end' => '61186912',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AHSA2-004'
),
'ENST00000484217' => array(
'start' => '61183558',
'end' => '61186807',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AHSA2-012'
),
'ENST00000487904' => array(
'start' => '61181351',
'end' => '61185746',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AHSA2-008'
),
'ENST00000489653' => array(
'start' => '61177472',
'end' => '61186913',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-003'
),
'ENST00000491217' => array(
'start' => '61185526',
'end' => '61186775',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-011'
),
'ENST00000493310' => array(
'start' => '61179131',
'end' => '61181680',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-010'
),
'ENST00000493628' => array(
'start' => '61181338',
'end' => '61186807',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-006'
),
'ENST00000384210' => array(
'start' => '61417244',
'end' => '61417378',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA70B-201'
),
'ENST00000444364' => array(
'start' => '61416887',
'end' => '61417197',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC016894.1-001'
),
'ENST00000578974' => array(
'start' => '61471455',
'end' => '61484130',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-003'
),
'ENST00000603028' => array(
'start' => '61471356',
'end' => '61482926',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-004'
),
'ENST00000603199' => array(
'start' => '61471380',
'end' => '61480410',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-002'
),
'ENST00000603652' => array(
'start' => '61471188',
'end' => '61482720',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-001'
),
'ENST00000605437' => array(
'start' => '61483373',
'end' => '61483941',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-005'
),
'ENST00000605372' => array(
'start' => '61249780',
'end' => '61250621',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-479F13.1-001'
),
'ENST00000609422' => array(
'start' => '61199979',
'end' => '61200769',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-493E12.2-001'
),
'ENSMUST00000020529' => array(
'start' => '23488547',
'end' => '23498030',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-002'
),
'ENSMUST00000109539' => array(
'start' => '23487882',
'end' => '23497930',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-003'
),
'ENSMUST00000122864' => array(
'start' => '23490321',
'end' => '23491424',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ahsa2-007'
),
'ENSMUST00000124801' => array(
'start' => '23489583',
'end' => '23492306',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ahsa2-008'
),
'ENSMUST00000128372' => array(
'start' => '23488549',
'end' => '23497538',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-004'
),
'ENSMUST00000128559' => array(
'start' => '23493154',
'end' => '23497895',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-005'
),
'ENSMUST00000147157' => array(
'start' => '23491109',
'end' => '23497905',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-006'
),
'ENSMUST00000153409' => array(
'start' => '23490427',
'end' => '23491077',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ahsa2-001'
),
'ENSMUST00000020538' => array(
'start' => '23256041',
'end' => '23297597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-201'
),
'ENSMUST00000102869' => array(
'start' => '23256078',
'end' => '23298249',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-001'
),
'ENSMUST00000102870' => array(
'start' => '23256055',
'end' => '23296233',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-002'
),
'ENSMUST00000109551' => array(
'start' => '23256041',
'end' => '23297597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-202'
),
'ENSMUST00000136235' => array(
'start' => '23256589',
'end' => '23267714',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-005'
),
'ENSMUST00000149371' => array(
'start' => '23256058',
'end' => '23282726',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Xpo1-003'
),
'ENSMUST00000150750' => array(
'start' => '23284644',
'end' => '23287451',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-004'
),
'ENSMUST00000125701' => array(
'start' => '23486805',
'end' => '23487323',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp34-002'
),
'ENSMUST00000129368' => array(
'start' => '23470289',
'end' => '23488368',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp34-003'
),
'ENSMUST00000129521' => array(
'start' => '23457938',
'end' => '23460897',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp34-005'
),
'ENSMUST00000130131' => array(
'start' => '23420055',
'end' => '23456686',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp34-006'
),
'ENSMUST00000137823' => array(
'start' => '23306916',
'end' => '23489744',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp34-001'
),
'ENSMUST00000148927' => array(
'start' => '23458077',
'end' => '23460610',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp34-004'
),
'ENSMUST00000155984' => array(
'start' => '23414976',
'end' => '23420652',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp34-007'
),
'ENSMUST00000180046' => array(
'start' => '23306895',
'end' => '23490560',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp34-201'
),
'ENSMUST00000083657' => array(
'start' => '23479561',
'end' => '23479667',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm22753-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007N6_0001' => array(
'genes_in_region' => array(
'ENSG00000082898' => array(
[maximum depth reached]
),
'ENSG00000115464' => array(
[maximum depth reached]
),
'ENSG00000206937' => array(
[maximum depth reached]
),
'ENSG00000234624' => array(
[maximum depth reached]
),
'ENSG00000271146' => array(
[maximum depth reached]
),
'ENSG00000273302' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Ovary',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Bladder',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Adrenal',
(int) 33 => 'Bladder',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Adrenal',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis',
(int) 64 => 'Adrenal',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Kidney',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Placenta',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Bladder',
(int) 78 => 'Ovary',
(int) 79 => 'Placenta',
(int) 80 => 'Testis',
(int) 81 => 'Adrenal',
(int) 82 => 'Breast',
(int) 83 => 'Kidney',
(int) 84 => 'Testis',
(int) 85 => 'Adipose',
(int) 86 => 'Adrenal',
(int) 87 => 'Brain',
(int) 88 => 'Breast',
(int) 89 => 'Kidney',
(int) 90 => 'Liver',
(int) 91 => 'Lung',
(int) 92 => 'Ovary',
(int) 93 => 'Placenta',
(int) 94 => 'Adrenal',
(int) 95 => 'Breast',
(int) 96 => 'Heart',
(int) 97 => 'Liver',
(int) 98 => 'Lung',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis'
)
),
'CIL_0007N6_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000020288' => array(
[maximum depth reached]
),
'ENSMUSG00000020290' => array(
[maximum depth reached]
),
'ENSMUSG00000065591' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Brain',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Bladder',
(int) 19 => 'Breast',
(int) 20 => 'Kidney',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Adipose',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Breast',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Muscle',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Adipose',
(int) 47 => 'Bladder',
(int) 48 => 'Brain',
(int) 49 => 'Breast',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Liver',
(int) 53 => 'Lung',
(int) 54 => 'Muscle',
(int) 55 => 'Ovary',
(int) 56 => 'Placenta',
(int) 57 => 'Testis',
(int) 58 => 'Bladder',
(int) 59 => 'Liver',
(int) 60 => 'Placenta',
(int) 61 => 'Adrenal',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Kidney',
(int) 65 => 'Liver',
(int) 66 => 'Lung',
(int) 67 => 'Ovary',
(int) 68 => 'Brain',
(int) 69 => 'Placenta',
(int) 70 => 'Adipose',
(int) 71 => 'Adrenal',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Muscle',
(int) 81 => 'Ovary',
(int) 82 => 'Placenta',
(int) 83 => 'Testis',
(int) 84 => 'Adipose',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Ovary',
(int) 88 => 'Placenta',
(int) 89 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N6_0003',
'tax_id' => '7955',
'chromosome' => '17',
'seq_start' => '23799197',
'seq_end' => '23815515',
'region_length' => '16318',
'region_type' => 'UCNEbase',
'el_id' => 'XPO1'
)
)
$gene_el = array(
'ENSMUST00000083657' => array(
'Adipose' => array(
'average_FPKM' => '1651.790',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '124.931',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '45.773',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '107.396',
'stddev_FPKM' => '60.96'
),
'Placenta' => array(
'average_FPKM' => '19.964',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '15.186',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000065591'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '1651.790',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '124.931',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '45.773',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '107.396',
'stddev_FPKM' => '60.96'
),
'Placenta' => array(
'average_FPKM' => '19.964',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '15.186',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000083657'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007N6_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007N6_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000082898' => 'exportin 1',
'ENSG00000115464' => 'ubiquitin specific peptidase 34',
'ENSG00000173209' => 'AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)',
'ENSG00000206937' => 'small nucleolar RNA, H/ACA box 70B',
'ENSG00000234624' => null,
'ENSG00000270820' => null,
'ENSG00000271146' => null,
'ENSG00000273302' => null,
'ENSMUSG00000020288' => 'AHA1, activator of heat shock protein ATPase 2',
'ENSMUSG00000020290' => 'exportin 1, CRM1 homolog (yeast)',
'ENSMUSG00000056342' => 'ubiquitin specific peptidase 34',
'ENSMUSG00000065591' => 'predicted gene, 22753'
),
'gene_name_arr' => array(
'ENSG00000082898' => 'XPO1',
'ENSG00000115464' => 'USP34',
'ENSG00000173209' => 'AHSA2',
'ENSG00000206937' => 'SNORA70B',
'ENSG00000234624' => 'AC016894.1',
'ENSG00000270820' => 'RP11-355B11.2',
'ENSG00000271146' => 'RP11-479F13.1',
'ENSG00000273302' => 'RP11-493E12.2',
'ENSMUSG00000020288' => 'Ahsa2',
'ENSMUSG00000020290' => 'Xpo1',
'ENSMUSG00000056342' => 'Usp34',
'ENSMUSG00000065591' => 'Gm22753'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 38 => 'Brain',
(int) 53 => 'Breast',
(int) 70 => 'Colon',
(int) 79 => 'Heart',
(int) 89 => 'Kidney',
(int) 104 => 'Liver',
(int) 120 => 'Lung',
(int) 135 => 'Muscle',
(int) 147 => 'Ovary',
(int) 169 => 'Placenta',
(int) 190 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 90,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000401558' => array(
'start' => '61477849',
'end' => '61538283',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-001'
),
'ENST00000404992' => array(
'start' => '61478338',
'end' => '61537110',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-006'
),
'ENST00000406957' => array(
'start' => '61478700',
'end' => '61538248',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-004'
),
'ENST00000420673' => array(
'start' => '61522611',
'end' => '61534278',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-019'
),
'ENST00000422552' => array(
'start' => '61522626',
'end' => '61534512',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-018'
),
'ENST00000428210' => array(
'start' => '61477934',
'end' => '61538231',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'XPO1-005'
),
'ENST00000436018' => array(
'start' => '61526471',
'end' => '61538626',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-009'
),
'ENST00000437159' => array(
'start' => '61496994',
'end' => '61526518',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'XPO1-024'
),
'ENST00000443240' => array(
'start' => '61502006',
'end' => '61538626',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-008'
),
'ENST00000449444' => array(
'start' => '61526462',
'end' => '61536588',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-016'
),
'ENST00000451765' => array(
'start' => '61499765',
'end' => '61537117',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-015'
),
'ENST00000457483' => array(
'start' => '61522630',
'end' => '61537640',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-017'
),
'ENST00000460037' => array(
'start' => '61493638',
'end' => '61495573',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-027'
),
'ENST00000461407' => array(
'start' => '61482625',
'end' => '61488663',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-007'
),
'ENST00000468259' => array(
'start' => '61502290',
'end' => '61525775',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-022'
),
'ENST00000469337' => array(
'start' => '61492342',
'end' => '61492994',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-028'
),
'ENST00000475744' => array(
'start' => '61496961',
'end' => '61498874',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-026'
),
'ENST00000476585' => array(
'start' => '61502146',
'end' => '61526523',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-023'
),
'ENST00000481073' => array(
'start' => '61477935',
'end' => '61494743',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-014'
),
'ENST00000481214' => array(
'start' => '61526067',
'end' => '61537694',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-020'
),
'ENST00000489954' => array(
'start' => '61499717',
'end' => '61502608',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-025'
),
'ENST00000492182' => array(
'start' => '61482625',
'end' => '61485958',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-030'
),
'ENST00000494468' => array(
'start' => '61485584',
'end' => '61488663',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-029'
),
'ENST00000495003' => array(
'start' => '61526151',
'end' => '61533968',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-021'
),
'ENST00000398571' => array(
'start' => '61187463',
'end' => '61470769',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP34-001'
),
'ENST00000411912' => array(
'start' => '61187463',
'end' => '61241614',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP34-002'
),
'ENST00000436269' => array(
'start' => '61187550',
'end' => '61204330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP34-005'
),
'ENST00000453133' => array(
'start' => '61348272',
'end' => '61470690',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'USP34-008'
),
'ENST00000453734' => array(
'start' => '61226788',
'end' => '61280333',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP34-006'
),
'ENST00000460004' => array(
'start' => '61339575',
'end' => '61348028',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-010'
),
'ENST00000463046' => array(
'start' => '61189277',
'end' => '61256886',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-003'
),
'ENST00000467128' => array(
'start' => '61206788',
'end' => '61214663',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-022'
),
'ENST00000468703' => array(
'start' => '61222632',
'end' => '61223255',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-026'
),
'ENST00000472689' => array(
'start' => '61208899',
'end' => '61222685',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-009'
),
'ENST00000472706' => array(
'start' => '61214600',
'end' => '61301032',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-012'
),
'ENST00000476716' => array(
'start' => '61204527',
'end' => '61220368',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-021'
),
'ENST00000482250' => array(
'start' => '61220405',
'end' => '61222975',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-018'
),
'ENST00000483672' => array(
'start' => '61220193',
'end' => '61221601',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-019'
),
'ENST00000484179' => array(
'start' => '61265585',
'end' => '61281151',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-014'
),
'ENST00000487547' => array(
'start' => '61221559',
'end' => '61223661',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-016'
),
'ENST00000490527' => array(
'start' => '61214627',
'end' => '61221845',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-017'
),
'ENST00000490552' => array(
'start' => '61189454',
'end' => '61191349',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-004'
),
'ENST00000492604' => array(
'start' => '61188474',
'end' => '61189796',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-025'
),
'ENST00000492882' => array(
'start' => '61265266',
'end' => '61266039',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-015'
),
'ENST00000494867' => array(
'start' => '61277702',
'end' => '61281139',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-013'
),
'ENST00000498268' => array(
'start' => '61190627',
'end' => '61193365',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-024'
),
'ENST00000357022' => array(
'start' => '61177418',
'end' => '61187551',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AHSA2-002'
),
'ENST00000394457' => array(
'start' => '61177529',
'end' => '61191203',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AHSA2-001'
),
'ENST00000410073' => array(
'start' => '61184712',
'end' => '61186810',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AHSA2-009'
),
'ENST00000463681' => array(
'start' => '61177428',
'end' => '61181325',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-007'
),
'ENST00000471542' => array(
'start' => '61178668',
'end' => '61186912',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AHSA2-004'
),
'ENST00000484217' => array(
'start' => '61183558',
'end' => '61186807',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AHSA2-012'
),
'ENST00000487904' => array(
'start' => '61181351',
'end' => '61185746',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AHSA2-008'
),
'ENST00000489653' => array(
'start' => '61177472',
'end' => '61186913',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-003'
),
'ENST00000491217' => array(
'start' => '61185526',
'end' => '61186775',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-011'
),
'ENST00000493310' => array(
'start' => '61179131',
'end' => '61181680',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-010'
),
'ENST00000493628' => array(
'start' => '61181338',
'end' => '61186807',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-006'
),
'ENST00000384210' => array(
'start' => '61417244',
'end' => '61417378',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA70B-201'
),
'ENST00000444364' => array(
'start' => '61416887',
'end' => '61417197',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC016894.1-001'
),
'ENST00000578974' => array(
'start' => '61471455',
'end' => '61484130',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-003'
),
'ENST00000603028' => array(
'start' => '61471356',
'end' => '61482926',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-004'
),
'ENST00000603199' => array(
'start' => '61471380',
'end' => '61480410',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-002'
),
'ENST00000603652' => array(
'start' => '61471188',
'end' => '61482720',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-001'
),
'ENST00000605437' => array(
'start' => '61483373',
'end' => '61483941',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-005'
),
'ENST00000605372' => array(
'start' => '61249780',
'end' => '61250621',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-479F13.1-001'
),
'ENST00000609422' => array(
'start' => '61199979',
'end' => '61200769',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-493E12.2-001'
),
'ENSMUST00000020529' => array(
'start' => '23488547',
'end' => '23498030',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-002'
),
'ENSMUST00000109539' => array(
'start' => '23487882',
'end' => '23497930',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-003'
),
'ENSMUST00000122864' => array(
'start' => '23490321',
'end' => '23491424',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ahsa2-007'
),
'ENSMUST00000124801' => array(
'start' => '23489583',
'end' => '23492306',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ahsa2-008'
),
'ENSMUST00000128372' => array(
'start' => '23488549',
'end' => '23497538',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-004'
),
'ENSMUST00000128559' => array(
'start' => '23493154',
'end' => '23497895',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-005'
),
'ENSMUST00000147157' => array(
'start' => '23491109',
'end' => '23497905',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-006'
),
'ENSMUST00000153409' => array(
'start' => '23490427',
'end' => '23491077',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ahsa2-001'
),
'ENSMUST00000020538' => array(
'start' => '23256041',
'end' => '23297597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-201'
),
'ENSMUST00000102869' => array(
'start' => '23256078',
'end' => '23298249',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-001'
),
'ENSMUST00000102870' => array(
'start' => '23256055',
'end' => '23296233',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-002'
),
'ENSMUST00000109551' => array(
'start' => '23256041',
'end' => '23297597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-202'
),
'ENSMUST00000136235' => array(
'start' => '23256589',
'end' => '23267714',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-005'
),
'ENSMUST00000149371' => array(
'start' => '23256058',
'end' => '23282726',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Xpo1-003'
),
'ENSMUST00000150750' => array(
'start' => '23284644',
'end' => '23287451',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-004'
),
'ENSMUST00000125701' => array(
'start' => '23486805',
'end' => '23487323',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp34-002'
),
'ENSMUST00000129368' => array(
'start' => '23470289',
'end' => '23488368',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp34-003'
),
'ENSMUST00000129521' => array(
'start' => '23457938',
'end' => '23460897',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp34-005'
),
'ENSMUST00000130131' => array(
'start' => '23420055',
'end' => '23456686',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp34-006'
),
'ENSMUST00000137823' => array(
'start' => '23306916',
'end' => '23489744',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp34-001'
),
'ENSMUST00000148927' => array(
'start' => '23458077',
'end' => '23460610',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp34-004'
),
'ENSMUST00000155984' => array(
'start' => '23414976',
'end' => '23420652',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp34-007'
),
'ENSMUST00000180046' => array(
'start' => '23306895',
'end' => '23490560',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp34-201'
),
'ENSMUST00000083657' => array(
'start' => '23479561',
'end' => '23479667',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm22753-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007N6_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007N6_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007N6_0001' => array(
'genes_in_region' => array(
'ENSG00000082898' => array(
[maximum depth reached]
),
'ENSG00000115464' => array(
[maximum depth reached]
),
'ENSG00000206937' => array(
[maximum depth reached]
),
'ENSG00000234624' => array(
[maximum depth reached]
),
'ENSG00000271146' => array(
[maximum depth reached]
),
'ENSG00000273302' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Ovary',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Bladder',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Adrenal',
(int) 33 => 'Bladder',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Adrenal',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis',
(int) 64 => 'Adrenal',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Kidney',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Placenta',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Bladder',
(int) 78 => 'Ovary',
(int) 79 => 'Placenta',
(int) 80 => 'Testis',
(int) 81 => 'Adrenal',
(int) 82 => 'Breast',
(int) 83 => 'Kidney',
(int) 84 => 'Testis',
(int) 85 => 'Adipose',
(int) 86 => 'Adrenal',
(int) 87 => 'Brain',
(int) 88 => 'Breast',
(int) 89 => 'Kidney',
(int) 90 => 'Liver',
(int) 91 => 'Lung',
(int) 92 => 'Ovary',
(int) 93 => 'Placenta',
(int) 94 => 'Adrenal',
(int) 95 => 'Breast',
(int) 96 => 'Heart',
(int) 97 => 'Liver',
(int) 98 => 'Lung',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis'
)
),
'CIL_0007N6_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000020288' => array(
[maximum depth reached]
),
'ENSMUSG00000020290' => array(
[maximum depth reached]
),
'ENSMUSG00000065591' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Brain',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Bladder',
(int) 19 => 'Breast',
(int) 20 => 'Kidney',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Adipose',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Breast',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Muscle',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Adipose',
(int) 47 => 'Bladder',
(int) 48 => 'Brain',
(int) 49 => 'Breast',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Liver',
(int) 53 => 'Lung',
(int) 54 => 'Muscle',
(int) 55 => 'Ovary',
(int) 56 => 'Placenta',
(int) 57 => 'Testis',
(int) 58 => 'Bladder',
(int) 59 => 'Liver',
(int) 60 => 'Placenta',
(int) 61 => 'Adrenal',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Kidney',
(int) 65 => 'Liver',
(int) 66 => 'Lung',
(int) 67 => 'Ovary',
(int) 68 => 'Brain',
(int) 69 => 'Placenta',
(int) 70 => 'Adipose',
(int) 71 => 'Adrenal',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Muscle',
(int) 81 => 'Ovary',
(int) 82 => 'Placenta',
(int) 83 => 'Testis',
(int) 84 => 'Adipose',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Ovary',
(int) 88 => 'Placenta',
(int) 89 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000082898' => 'exportin 1',
'ENSG00000115464' => 'ubiquitin specific peptidase 34',
'ENSG00000173209' => 'AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)',
'ENSG00000206937' => 'small nucleolar RNA, H/ACA box 70B',
'ENSG00000234624' => null,
'ENSG00000270820' => null,
'ENSG00000271146' => null,
'ENSG00000273302' => null,
'ENSMUSG00000020288' => 'AHA1, activator of heat shock protein ATPase 2',
'ENSMUSG00000020290' => 'exportin 1, CRM1 homolog (yeast)',
'ENSMUSG00000056342' => 'ubiquitin specific peptidase 34',
'ENSMUSG00000065591' => 'predicted gene, 22753'
)
$gene_name_arr = array(
'ENSG00000082898' => 'XPO1',
'ENSG00000115464' => 'USP34',
'ENSG00000173209' => 'AHSA2',
'ENSG00000206937' => 'SNORA70B',
'ENSG00000234624' => 'AC016894.1',
'ENSG00000270820' => 'RP11-355B11.2',
'ENSG00000271146' => 'RP11-479F13.1',
'ENSG00000273302' => 'RP11-493E12.2',
'ENSMUSG00000020288' => 'Ahsa2',
'ENSMUSG00000020290' => 'Xpo1',
'ENSMUSG00000056342' => 'Usp34',
'ENSMUSG00000065591' => 'Gm22753'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N6_0001',
'tax_id' => '9606',
'chromosome' => '2',
'seq_start' => '61187520',
'seq_end' => '61525646',
'region_length' => '338126',
'region_type' => 'UCNEbase',
'el_id' => 'XPO1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N6_0002',
'tax_id' => '10090',
'chromosome' => '11',
'seq_start' => '23268537',
'seq_end' => '23489768',
'region_length' => '221231',
'region_type' => 'UCNEbase',
'el_id' => 'XPO1'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N6_0003',
'tax_id' => '7955',
'chromosome' => '17',
'seq_start' => '23799197',
'seq_end' => '23815515',
'region_length' => '16318',
'region_type' => 'UCNEbase',
'el_id' => 'XPO1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 38 => 'Brain',
(int) 53 => 'Breast',
(int) 70 => 'Colon',
(int) 79 => 'Heart',
(int) 89 => 'Kidney',
(int) 104 => 'Liver',
(int) 120 => 'Lung',
(int) 135 => 'Muscle',
(int) 147 => 'Ovary',
(int) 169 => 'Placenta',
(int) 190 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 90
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000401558' => array(
'start' => '61477849',
'end' => '61538283',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-001'
),
'ENST00000404992' => array(
'start' => '61478338',
'end' => '61537110',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-006'
),
'ENST00000406957' => array(
'start' => '61478700',
'end' => '61538248',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-004'
),
'ENST00000420673' => array(
'start' => '61522611',
'end' => '61534278',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-019'
),
'ENST00000422552' => array(
'start' => '61522626',
'end' => '61534512',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-018'
),
'ENST00000428210' => array(
'start' => '61477934',
'end' => '61538231',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'XPO1-005'
),
'ENST00000436018' => array(
'start' => '61526471',
'end' => '61538626',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-009'
),
'ENST00000437159' => array(
'start' => '61496994',
'end' => '61526518',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'XPO1-024'
),
'ENST00000443240' => array(
'start' => '61502006',
'end' => '61538626',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-008'
),
'ENST00000449444' => array(
'start' => '61526462',
'end' => '61536588',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-016'
),
'ENST00000451765' => array(
'start' => '61499765',
'end' => '61537117',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-015'
),
'ENST00000457483' => array(
'start' => '61522630',
'end' => '61537640',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'XPO1-017'
),
'ENST00000460037' => array(
'start' => '61493638',
'end' => '61495573',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-027'
),
'ENST00000461407' => array(
'start' => '61482625',
'end' => '61488663',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-007'
),
'ENST00000468259' => array(
'start' => '61502290',
'end' => '61525775',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-022'
),
'ENST00000469337' => array(
'start' => '61492342',
'end' => '61492994',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-028'
),
'ENST00000475744' => array(
'start' => '61496961',
'end' => '61498874',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-026'
),
'ENST00000476585' => array(
'start' => '61502146',
'end' => '61526523',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-023'
),
'ENST00000481073' => array(
'start' => '61477935',
'end' => '61494743',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-014'
),
'ENST00000481214' => array(
'start' => '61526067',
'end' => '61537694',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-020'
),
'ENST00000489954' => array(
'start' => '61499717',
'end' => '61502608',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-025'
),
'ENST00000492182' => array(
'start' => '61482625',
'end' => '61485958',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'XPO1-030'
),
'ENST00000494468' => array(
'start' => '61485584',
'end' => '61488663',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-029'
),
'ENST00000495003' => array(
'start' => '61526151',
'end' => '61533968',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'XPO1-021'
),
'ENST00000398571' => array(
'start' => '61187463',
'end' => '61470769',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP34-001'
),
'ENST00000411912' => array(
'start' => '61187463',
'end' => '61241614',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP34-002'
),
'ENST00000436269' => array(
'start' => '61187550',
'end' => '61204330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP34-005'
),
'ENST00000453133' => array(
'start' => '61348272',
'end' => '61470690',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'USP34-008'
),
'ENST00000453734' => array(
'start' => '61226788',
'end' => '61280333',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP34-006'
),
'ENST00000460004' => array(
'start' => '61339575',
'end' => '61348028',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-010'
),
'ENST00000463046' => array(
'start' => '61189277',
'end' => '61256886',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-003'
),
'ENST00000467128' => array(
'start' => '61206788',
'end' => '61214663',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-022'
),
'ENST00000468703' => array(
'start' => '61222632',
'end' => '61223255',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-026'
),
'ENST00000472689' => array(
'start' => '61208899',
'end' => '61222685',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-009'
),
'ENST00000472706' => array(
'start' => '61214600',
'end' => '61301032',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-012'
),
'ENST00000476716' => array(
'start' => '61204527',
'end' => '61220368',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-021'
),
'ENST00000482250' => array(
'start' => '61220405',
'end' => '61222975',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-018'
),
'ENST00000483672' => array(
'start' => '61220193',
'end' => '61221601',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-019'
),
'ENST00000484179' => array(
'start' => '61265585',
'end' => '61281151',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-014'
),
'ENST00000487547' => array(
'start' => '61221559',
'end' => '61223661',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-016'
),
'ENST00000490527' => array(
'start' => '61214627',
'end' => '61221845',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-017'
),
'ENST00000490552' => array(
'start' => '61189454',
'end' => '61191349',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-004'
),
'ENST00000492604' => array(
'start' => '61188474',
'end' => '61189796',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP34-025'
),
'ENST00000492882' => array(
'start' => '61265266',
'end' => '61266039',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-015'
),
'ENST00000494867' => array(
'start' => '61277702',
'end' => '61281139',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-013'
),
'ENST00000498268' => array(
'start' => '61190627',
'end' => '61193365',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP34-024'
),
'ENST00000357022' => array(
'start' => '61177418',
'end' => '61187551',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AHSA2-002'
),
'ENST00000394457' => array(
'start' => '61177529',
'end' => '61191203',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AHSA2-001'
),
'ENST00000410073' => array(
'start' => '61184712',
'end' => '61186810',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'AHSA2-009'
),
'ENST00000463681' => array(
'start' => '61177428',
'end' => '61181325',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-007'
),
'ENST00000471542' => array(
'start' => '61178668',
'end' => '61186912',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AHSA2-004'
),
'ENST00000484217' => array(
'start' => '61183558',
'end' => '61186807',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AHSA2-012'
),
'ENST00000487904' => array(
'start' => '61181351',
'end' => '61185746',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'AHSA2-008'
),
'ENST00000489653' => array(
'start' => '61177472',
'end' => '61186913',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-003'
),
'ENST00000491217' => array(
'start' => '61185526',
'end' => '61186775',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-011'
),
'ENST00000493310' => array(
'start' => '61179131',
'end' => '61181680',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-010'
),
'ENST00000493628' => array(
'start' => '61181338',
'end' => '61186807',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'AHSA2-006'
),
'ENST00000384210' => array(
'start' => '61417244',
'end' => '61417378',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA70B-201'
),
'ENST00000444364' => array(
'start' => '61416887',
'end' => '61417197',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AC016894.1-001'
),
'ENST00000578974' => array(
'start' => '61471455',
'end' => '61484130',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-003'
),
'ENST00000603028' => array(
'start' => '61471356',
'end' => '61482926',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-004'
),
'ENST00000603199' => array(
'start' => '61471380',
'end' => '61480410',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-002'
),
'ENST00000603652' => array(
'start' => '61471188',
'end' => '61482720',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-001'
),
'ENST00000605437' => array(
'start' => '61483373',
'end' => '61483941',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-355B11.2-005'
),
'ENST00000605372' => array(
'start' => '61249780',
'end' => '61250621',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-479F13.1-001'
),
'ENST00000609422' => array(
'start' => '61199979',
'end' => '61200769',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-493E12.2-001'
),
'ENSMUST00000020529' => array(
'start' => '23488547',
'end' => '23498030',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-002'
),
'ENSMUST00000109539' => array(
'start' => '23487882',
'end' => '23497930',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-003'
),
'ENSMUST00000122864' => array(
'start' => '23490321',
'end' => '23491424',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ahsa2-007'
),
'ENSMUST00000124801' => array(
'start' => '23489583',
'end' => '23492306',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ahsa2-008'
),
'ENSMUST00000128372' => array(
'start' => '23488549',
'end' => '23497538',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-004'
),
'ENSMUST00000128559' => array(
'start' => '23493154',
'end' => '23497895',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-005'
),
'ENSMUST00000147157' => array(
'start' => '23491109',
'end' => '23497905',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ahsa2-006'
),
'ENSMUST00000153409' => array(
'start' => '23490427',
'end' => '23491077',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ahsa2-001'
),
'ENSMUST00000020538' => array(
'start' => '23256041',
'end' => '23297597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-201'
),
'ENSMUST00000102869' => array(
'start' => '23256078',
'end' => '23298249',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-001'
),
'ENSMUST00000102870' => array(
'start' => '23256055',
'end' => '23296233',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-002'
),
'ENSMUST00000109551' => array(
'start' => '23256041',
'end' => '23297597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-202'
),
'ENSMUST00000136235' => array(
'start' => '23256589',
'end' => '23267714',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-005'
),
'ENSMUST00000149371' => array(
'start' => '23256058',
'end' => '23282726',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Xpo1-003'
),
'ENSMUST00000150750' => array(
'start' => '23284644',
'end' => '23287451',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Xpo1-004'
),
'ENSMUST00000125701' => array(
'start' => '23486805',
'end' => '23487323',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp34-002'
),
'ENSMUST00000129368' => array(
'start' => '23470289',
'end' => '23488368',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp34-003'
),
'ENSMUST00000129521' => array(
'start' => '23457938',
'end' => '23460897',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp34-005'
),
'ENSMUST00000130131' => array(
'start' => '23420055',
'end' => '23456686',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp34-006'
),
'ENSMUST00000137823' => array(
'start' => '23306916',
'end' => '23489744',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp34-001'
),
'ENSMUST00000148927' => array(
'start' => '23458077',
'end' => '23460610',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp34-004'
),
'ENSMUST00000155984' => array(
'start' => '23414976',
'end' => '23420652',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp34-007'
),
'ENSMUST00000180046' => array(
'start' => '23306895',
'end' => '23490560',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp34-201'
),
'ENSMUST00000083657' => array(
'start' => '23479561',
'end' => '23479667',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm22753-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007N6_0001' => array(
'genes_in_region' => array(
'ENSG00000082898' => array(
[maximum depth reached]
),
'ENSG00000115464' => array(
[maximum depth reached]
),
'ENSG00000206937' => array(
[maximum depth reached]
),
'ENSG00000234624' => array(
[maximum depth reached]
),
'ENSG00000271146' => array(
[maximum depth reached]
),
'ENSG00000273302' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Ovary',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Bladder',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Adrenal',
(int) 33 => 'Bladder',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Adrenal',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis',
(int) 64 => 'Adrenal',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Kidney',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Placenta',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Bladder',
(int) 78 => 'Ovary',
(int) 79 => 'Placenta',
(int) 80 => 'Testis',
(int) 81 => 'Adrenal',
(int) 82 => 'Breast',
(int) 83 => 'Kidney',
(int) 84 => 'Testis',
(int) 85 => 'Adipose',
(int) 86 => 'Adrenal',
(int) 87 => 'Brain',
(int) 88 => 'Breast',
(int) 89 => 'Kidney',
(int) 90 => 'Liver',
(int) 91 => 'Lung',
(int) 92 => 'Ovary',
(int) 93 => 'Placenta',
(int) 94 => 'Adrenal',
(int) 95 => 'Breast',
(int) 96 => 'Heart',
(int) 97 => 'Liver',
(int) 98 => 'Lung',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis'
)
),
'CIL_0007N6_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000020288' => array(
[maximum depth reached]
),
'ENSMUSG00000020290' => array(
[maximum depth reached]
),
'ENSMUSG00000065591' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Brain',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Bladder',
(int) 19 => 'Breast',
(int) 20 => 'Kidney',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Adipose',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Breast',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Muscle',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Adipose',
(int) 47 => 'Bladder',
(int) 48 => 'Brain',
(int) 49 => 'Breast',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Liver',
(int) 53 => 'Lung',
(int) 54 => 'Muscle',
(int) 55 => 'Ovary',
(int) 56 => 'Placenta',
(int) 57 => 'Testis',
(int) 58 => 'Bladder',
(int) 59 => 'Liver',
(int) 60 => 'Placenta',
(int) 61 => 'Adrenal',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Kidney',
(int) 65 => 'Liver',
(int) 66 => 'Lung',
(int) 67 => 'Ovary',
(int) 68 => 'Brain',
(int) 69 => 'Placenta',
(int) 70 => 'Adipose',
(int) 71 => 'Adrenal',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Muscle',
(int) 81 => 'Ovary',
(int) 82 => 'Placenta',
(int) 83 => 'Testis',
(int) 84 => 'Adipose',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Ovary',
(int) 88 => 'Placenta',
(int) 89 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N6_0003',
'tax_id' => '7955',
'chromosome' => '17',
'seq_start' => '23799197',
'seq_end' => '23815515',
'region_length' => '16318',
'region_type' => 'UCNEbase',
'el_id' => 'XPO1'
)
)
$gene_el = array(
'ENSMUST00000083657' => array(
'Adipose' => array(
'average_FPKM' => '1651.790',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '124.931',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '45.773',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '107.396',
'stddev_FPKM' => '60.96'
),
'Placenta' => array(
'average_FPKM' => '19.964',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '15.186',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000065591'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '1651.790',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '124.931',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '45.773',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '107.396',
'stddev_FPKM' => '60.96'
),
'Placenta' => array(
'average_FPKM' => '19.964',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '15.186',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000083657'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(XPO1)