C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: repulsive guidance molecule family member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139780 Rgma-003 ENSMUSG00000070509 10090 + 7:73391227-73419899 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000139780
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000139780 11.849±0.67 4.464±0.69 2.288±0.37 9.285±5.90 7.525±3.78 2.645±0.94 4.132±1.29 2.418±0.24 0.086±0.05 6.794±0.41 5.474±2.57 5.356±2.35 1.508±1.17 2.253±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GY CIL_0006GY_0002 CGP 7:73375520-73541746

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329082 RGMA-001 protein_coding Homo_sapiens 0 1574
ENST00000425933 RGMA-201 protein_coding Homo_sapiens 0 1570
ENST00000542321 RGMA-007 protein_coding Homo_sapiens 0 1676
ENST00000543599 RGMA-202 protein_coding Homo_sapiens 0 1574
ENST00000554387 RGMA-005 nonsense_mediated_decay Homo_sapiens 0 1362
ENST00000555584 RGMA-012 processed_transcript Homo_sapiens 0 316
ENST00000555598 RGMA-009 protein_coding Homo_sapiens 0 451
ENST00000556658 RGMA-006 protein_coding Homo_sapiens 0 1365
ENST00000556950 RGMA-008 protein_coding Homo_sapiens 4e-27 124
ENST00000557301 RGMA-004 protein_coding Homo_sapiens 0 1574
ENST00000557420 RGMA-010 protein_coding Homo_sapiens 0 712
ENST00000557608 RGMA-011 retained_intron Homo_sapiens 0 302

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