C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adenosine deaminase, tRNA-specific 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139820 Adat1-003 ENSMUSG00000031949 10090 - 8:111970865-111992302 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000139820
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000139820 0.557±0.16 0.545±0.00 1.599±0.38 1.100±0.14 0.781±0.43 0.622±0.32 0.149±0.03 0.471±0.11 0.955±0.40 0.698±0.14 0.464±0.09 1.207±0.32 0.675±0.28 1.331±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GX CIL_0001GX_0002 CGP 8:111940703-111992302
CIL_0002D7 CIL_0002D7_0002 CGP 8:111966908-112011323

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 ISS RNA binding
GO:0005575 ND cellular_component
GO:0008033 ISS tRNA processing
GO:0008251 ISS tRNA-specific adenosine deaminase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307921 ADAT1-001 protein_coding Homo_sapiens 0 1099
ENST00000564657 ADAT1-006 protein_coding Homo_sapiens 0 361
ENST00000565109 ADAT1-007 processed_transcript Homo_sapiens 0 250
ENST00000566445 ADAT1-002 nonsense_mediated_decay Homo_sapiens 0 250
ENST00000567281 ADAT1-008 protein_coding Homo_sapiens 0 536
ENST00000568001 ADAT1-009 nonsense_mediated_decay Homo_sapiens 0 250

Loading