C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell death inducing Trp53 target 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140187 Cdip1-004 ENSMUSG00000004071 10090 - 16:4766841-4771512 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverLungOvaryENSMUST00000140187
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Lung Ovary
ENSMUST00000140187 6.785±0.15 14.518±1.94 5.759±0.34 6.622±0.75 6.195±0.40 4.745±0.50 5.205±0.31 5.091±0.44 9.771±2.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009E CIL_00009E_0002 CGP 16:4710059-4766742
CIL_0000TZ CIL_0000TZ_0002 CGP 16:4726361-4790292
CIL_000108 CIL_000108_0002 CGP 16:4750348-4867691

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399599 CDIP1-005 protein_coding Homo_sapiens 0 680
ENST00000562334 CDIP1-007 protein_coding Homo_sapiens 0 538
ENST00000563186 CDIP1-011 protein_coding Homo_sapiens 0 248
ENST00000563332 CDIP1-004 protein_coding Homo_sapiens 0 680
ENST00000563507 CDIP1-002 protein_coding Homo_sapiens 0 536
ENST00000564828 CDIP1-006 protein_coding Homo_sapiens 0 324
ENST00000567695 CDIP1-001 protein_coding Homo_sapiens 0 680
ENST00000588381 CDIP1-013 protein_coding Homo_sapiens 0 191
ENST00000589159 CDIP1-018 nonsense_mediated_decay Homo_sapiens 0 531
ENST00000589890 CDIP1-017 protein_coding Homo_sapiens 0 285
ENST00000611166 CDIP1-201 protein_coding Homo_sapiens 0 680

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